RNA id: TU255286


Basic Information

Item Value
RNA id TU255286
length 2663
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G215489
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22781323 ~ 22815252 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agatcatAATAGGACACAGTAGGAAGGAAGTcaagtttttaatgttttatgagTCAGAAAATGCAGAGAAGTCAAAGGTCGTTTCAGGACAGATTTGCTCCTTTATGAGACAGCaaaaaaacagtgatgaaaCAAAACGGAgtgagaaggaggaggaggagaatgaCAAATCAGAGAAATAAAGATGAAAGATCAACACACGGAGGGACTGCGCTATACAGTCGAGTGAAAACAGTCCAATACCTGACAATTCCCTCAGACTAGCAGTACTACAGATTCCTGTGGAGAAACACAGGGTGaaataacagacagagagagagagagagtgctAACTCTACAGCAGACTGCACTCAGTCTGGGTTTAAGGACTCTTGAGGTTTGCACCTAGTTTGCATTTCTTCTTGTGATTATacgattttttttgtttgtttttaatatatatagattttttcGTTTTGATCTTCCCTAGACATCCCACACATCACCGGGGTCAGCGTAGGCCAGTGACTGGCACGCCGTGTTGCCCTGATATGACGCGAGGCTCAGGCTGGGGTGGCGCGACACCCGGGCGTTCAGGACTTGACGTTGAGGGAGCGGGCGGACCTGTCGTGGTGCCAGTCCCTCAGCCTGGCATAGCGAGGGCTCTGAATCTCAGTGAGGAACTTTTCCCTGCCAGAGCCTGGACCTTTTCATGTTCTCATCATCCGGGTCCTGCACTGAGGAAAGcaTGTAGTCAGTTCCTGTAAGCTGGGCTAGGATGCGGAAGGAGCGGGACTGTGTGGTGCCGGTGCGAGGCTGCCAGTCCTGCGTGTCCTCGATCAGACGCTTCTTACTGCGATCGTTTGGGATAAAGCACGGGATGTTCTCCACCCGCAGACCGTGCCTACGTGGAGGAGTCAGACGCGTTAACAGCAGCTCTTTTACCACAATCAGGATGAACACTGCACTGACGAAAACACACCAAGCACAACAAGCACAAACAGCTAGATAACATGCTGGCGTCAACCGCCACTGGCACAGCAGTTTATCTTCATCTTTTATCCATTTCGAGTGAACGAAGAGTGTTCCAGCTTTCACGACACCCCCGGAATGCCTATGAATGAACGTTTCCAGAGTCTGGAACTAGCTTTTATTCGACTATAGCACACTATTACCTAAATAGCGTTGGTAATTCAcacttatttaaatttattgaaATGACAATGACCCACTGACAGCTCCACTTTAATAAAACAGTGGCTAGCAGGGCAGCAcgatacacacaaaaacaacgCACTGGGACTGTGATACGAGTTCGAACATGCTGACCCTGATCTGTGATCTGTTATGTTTAGAGattaggctgctttcacactgttGTTTTAAACCACCGGTGCACGTTTTACACAATCCTTTACCTCCTGACCAGTCAGGTCACAAGTTAGGGGGCCAAGCATgagaaacaaacatggaggGCAGCATTAGCGTTGTTAGTGAGGGAATATACAGAGatttatggaaaatatttcatcGCCACAATTCCAgtgtttaaaactaaaaataatgacTACTTTAAGACATTACCCAGTACACAAAaagtaaatagatagatagatagatagatagatagacagataccaagtgtgaaaacaccagCACAAttaagtttaagtttttttgtttttttccatgccATACCACGCACATCTGGAACGTCAGAGCTTGGTCACATGACATATTAACAAAAACTCGCTTCGTTAAAGTGCTCGTTTGCATATTCCAGACTTCTCTGATGTGTGATGTCagcactacaaaaaaaaaaaacatcatcccTCGAGGCTAGCGTCCTCGTACACCCTCACCCTCACTCTCAACCAATCGGACGAGCACAAGACACACTCCGTTCTCGTTTCGGCACAACGCATCAGAACCGCGTGCTCTCTTCACTTACTTGTTGTCCTGGTACAAATCTTCATAGAATCCCTCTCCTCTACTGAAAAAGGGAAATAGAAAGAAgataaagagggaaaaaatagaGCAATAGAGTGACTATAAGAATGAATATCGCTGACAGTTGAAATTTAGTGAATATCTATCATCCAAGAAGGAAGGAATAGAAAAAGGGGTGTTACTAACTTGTCAATAACCTCCATCTGCTAGATTAGGGAGAGCAATAGAGAAGAGAGAgattaatttcttttatataaaacacaaaacacacacacacacacacacacacaaattcaagATGCAGGGAAGTGAAATGAGTCACACTATTTGTGGTGTATGATGCAGAATGCGTGCACGTTGTGAAAAGCTGAAAGCAGCCACAAGCATTCGATCCTAAATATCACTCCTTTATCACGCTCTGTAGTCTGATCCTTGGACTTTCACCATGTCTGTACGAGAGTGGGACAGGAGGAAGACGCTGTAGCTCTTTATTGCTTGGCTGTTCATATGTGACAACAAAAAGACACTAAAGCCATTATTTTACCCAGAAGTCCCTTTTCTATGCCTTCCCCCCCCTTCACTATCTGTCTTTGTCCAAGctaatttctctttatttctagtCCCTGCATTTGCATCTCCTTACTTTCTAAACTGTTCTAGGACATAGCAAAGACATAGCAATAAAAATggcttccattttttttaaaaaactgccatcatgtgttttttttttt

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005516 calmodulin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255291 lncRNA downstream 10885 22788216 ~ 22797514 (-) True G215493
TU255279 lncRNA downstream 29580 22769637 ~ 22778819 (-) False cltb
TU255292 lncRNA downstream 53292 22754560 ~ 22755107 (-) True G215494
TU255308 lncRNA downstream 70920 22737276 ~ 22737479 (-) True G215509
TU255306 lncRNA downstream 74304 22733729 ~ 22734095 (-) True G215507
TU255289 lncRNA upstream 7468 22822720 ~ 22826241 (-) True G215491
TU255367 lncRNA upstream 146688 22961940 ~ 22962156 (-) True G215568
TU255388 lncRNA upstream 183969 22999221 ~ 22999466 (-) True G215589
TU255393 lncRNA upstream 191342 23006594 ~ 23006797 (-) True G215594
TU255395 lncRNA upstream 193819 23009071 ~ 23009310 (-) True G215596
XM_026947036.2 mRNA downstream 29331 22769639 ~ 22779068 (-) True cltb
XM_026947037.2 mRNA downstream 29338 22769639 ~ 22779061 (-) False cltb
XM_026947038.2 mRNA downstream 29342 22769639 ~ 22779057 (-) False cltb
XM_034310258.1 mRNA downstream 44528 22755981 ~ 22763871 (-) True faf2
XM_034309816.1 mRNA downstream 78546 22706554 ~ 22729853 (-) True cdhr2
XM_026947083.2 mRNA upstream 11692 22826944 ~ 23035173 (-) True unc5a
XM_026947066.2 mRNA upstream 470456 23285708 ~ 23297814 (-) False dok3
XM_026947065.2 mRNA upstream 470456 23285708 ~ 23294554 (-) True dok3
XM_026947064.2 mRNA upstream 470456 23285708 ~ 23294551 (-) False dok3
XM_026947063.2 mRNA upstream 482697 23297949 ~ 23309411 (-) True LOC113546952
TU255280 other downstream 29580 22769637 ~ 22778819 (-) False cltb
TU255282 other downstream 103920 22698413 ~ 22704479 (-) False smim13
XR_004579404.1 other downstream 388489 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other downstream 388489 22413667 ~ 22419910 (-) True LOC117598969
TU255018 other downstream 444134 22339042 ~ 22364265 (-) False LOC117598814
TU255434 other upstream 321674 23136926 ~ 23156666 (-) False G215624
TU255581 other upstream 509233 23324485 ~ 23327870 (-) False fam193b
TU256261 other upstream 1725583 24540835 ~ 24588450 (-) False usp7
trnad-guc_6 other upstream 2049395 24864647 ~ 24864718 (-) True trnad-guc_6
trnap-agg_10 other upstream 2868888 25684140 ~ 25684211 (-) True trnap-agg_10

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014866 True 480 mRNA 0.54 4 NC_007125.7 51098036 ~ 51115196 (+)
grasscarp (Ctenopharyngodon idella) CI01000000_03129624_03148993.mRNA True 1027 mRNA 0.56 9 CI01000000 3129464 ~ 3148993 (-)