RNA id: XM_026947065.2


Basic Information

Item Value
RNA id XM_026947065.2
length 2832
RNA type mRNA
GC content 0.46
exon number 5
gene id dok3
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23285708 ~ 23297814 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGTATCTGACACTTAGCAACAtgtgcatagcaacagataCAGCGCCAGATGGCTACAAAGTGGCCTATATGGCGTGTGCTAAAAGCGTAATTACATGGTACATGTATTTTACAGACTGGCACCTCGATGTATAAATGGTACATTACAAACCATTACTTCTGTATGTTTCCTGTCACTCAGAAGTACGTCTGGCTATGATTAACATCATGCTTATAGACGCTCCTGGTGGTGAATGACGCAACGTGCATGCGGAAATTCACATTAATCTTTTTGGTGGCTGGTTGGTGACACGCTCTTCAGTTCTCCTCAGCTCTAACGCGAGAAGAAGTGCTGAAGGATTTGCACTGAAGCGGCACAATGGATATATTAGTGAAAGAAGGCTCGCTGTTTTTACAGGGAGTCAAATTTGGAAAGATCTGGAGGAAGATTTGGGTGACAGTGTTTAAGCCTAGCCAGGCGGGAATCGGTCGCATTGAGATGTATGACATGAGGGAAGGAGCAGGCATGTCTGCGAAGCTTGCCATGCTAAAGAAAGCTGAGAAGCGGGTGATCCGGCTGGCAGAGTGCCTCAGCGTGACGCCGGCGCTGGGTGAAAGTTGCCCGGCAGGCTGCACAGCCTTTTACCTCAACACAGCTCAGCGCATCTACACTCTGGCAGCGCCGACGCAGGACGAATGGGTAtctgctctctgctctctgGCATTTCAGTGGAACGAGGGAGGTGGCGAGGCCAGGAGAGCGCAGggagatggtggtggtgatgatgcgCCCATGACTGAAAACGACATCTACTCCACCTTGAGTCCAGGTCAGTTccaggtgacggtggcaagctCAGAGGCATCCATTCGTTGCTGCATGTTCGGATCGTACCTGCTGTCCCCTGAGAAAGAGTCCCTGTGCCTGCTGAACATGAAGACAGGCCATGCTGCGTTCTGCTGGCCGTATCGCTTTCTCCGCAGATTTGGCCTGGTCAAGGAAGGAATAACTATCGAGGCAGGCCGTCGTTGCCAAACAGGAGAGGGCCTCTTCATTTTCCTTTCCAAGCAGGGGCCACAGATCTACCGGGCTATCGAGGAGGCCATCATGCATCAAAGCGTGCAAGACCTGCTGTCCAAAGCTACCGCTTTGCCGCAAGAGAATACGCTCCCACCGCCACCGCCACCGCCACCGCAAACAGCCAGTCCGGCATCTCCAAAATCTGGCATCTCTCGAAGAAACCTTGCACTACCTGCACTTCCCGGCACAAAACCCCCCATCAGAAGCCCTCAACCTGAATCTACCTGAAGCACTGTATGCCAAGGTAAAGCCTCTGCCCAAACCAAGAAATGTACCGACACCTCCAGCTTTGCCTGTGCCCAAACTCATGCCTGAGCCAGAGACAAAGCCAAAAGATTTGGACATTAGTGACCAGGAACCTGACTATGAGTCCTGTGACTGGAACCAGAAAACCCAGACGAAGGAGGACAGTTCTGACAGTCAGTTGTACAGCACAGTCAGACCTCTGCTCCATACCAGAAGAAAACCCGATGTAGATACCAACCAAGAGCAGCTTAAAAGCAGCCGACAGTCTCCCGAATTTGGCCACGCCGAAGTCCCGGTCAGCTTCAAACAAATCCTATCCGATGTTCTCTTCAAAGATGTGACCAGGATCGCACCACCTCCTCCACCCAAAACATACAGAGAGAACTCAAATCTCTCAGCTGAACCGGATTACTATGAGATCCAGAAATGAACTAACCACTATTAAAAGAAACCCAACCGTAGTGTGTTCGGAAGGTCTGAAGCAACGTGGATCTGATTTCCCAGCTGTTGTAAAACCTTCGTGCAAAAATGCTTTTTCTATCAGGTCTCAATTTGATTTCTCTGGTACCAAGTGTATGATGGAGCTTGAAATAGTGCAGATTGAAGATTGGTAGAACGCTATCGTGACTGAATTGTCCTGATGCGTCAAAAAGTTCGAAGACATAGTTCGAAGACGTATCAGACTGCGTTCGTGCACCAGTGCATCATTCTCATTGAAATGAATGGTTTGTGAGCGCtacagaatgtatttattgcacTCTGCTTGACAAATTGCCTTTTAAGTGTTGCTgtattaaagtattggcactccTAGCTCTGCTTGGGTTGCTGGCTACTACTTCAGCCGGCCAACCAACTTGCTGTGTTGCTCTTGTACTTAATAGTTCACTCTGTTATGGAGACATCCAACTGAGCCAAGAACATTTTAATGTACAATAAGTTATatgtctattttttaaaatatcatatcaaaGAAAATCAACATTTTGAATAGTTCCATACTAACTGTGCTCATTACTAGTTATCAGCCCACAGCCTCCAGAGAAAAGATTGACAGATCTTGAATAATGTACTTGAATAATGTACTTGAATAATGTACGGATAGTTATGGGTTCGGTACTAAGAATTGGCCGATACTCCGAGCTCCGGGAGCGCTCGTTCCCTAATGAACACGATTAGATCCAGTGCGTTCCTTTGCACTATGCATACAGTAACTGCAATGATATTGAATGTAAGGAAAATTGTTATTTATGGTGAACATGATGAGTGTGTCAGAGGTTacacataatgtaataatatataatataaaacatatttaatcatAACAGAATGTAAATGGTCTATACATTAAAACAGTAAATGCTTTTTTGCCTCTTAAATTATggtttttattaaacagtttgAGTTGGAAAACGATTGCATTACATACATAAATAGCAGTTGGTTCATTGGCAGTGGATTTATGTTACGTGTGGATGTAGATCACAATGCTCAGGTAATAAAGTGcagaaatccaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255439 lncRNA downstream 141849 23134919 ~ 23143859 (-) True G215624
TU255407 lncRNA downstream 219907 23065567 ~ 23065801 (-) True G215608
TU255405 lncRNA downstream 226887 23058613 ~ 23058821 (-) True G215606
TU255395 lncRNA downstream 276398 23009071 ~ 23009310 (-) True G215596
TU255393 lncRNA downstream 278911 23006594 ~ 23006797 (-) True G215594
TU255580 lncRNA upstream 18341 23312895 ~ 23315021 (-) False fam193b
TU255584 lncRNA upstream 33790 23328344 ~ 23328571 (-) True G215751
TU255588 lncRNA upstream 61735 23356289 ~ 23360239 (-) False LOC113546965
TU255745 lncRNA upstream 327822 23622376 ~ 23622605 (-) True G215895
TU255743 lncRNA upstream 414998 23709552 ~ 23751577 (-) True G215893
XM_026947083.2 mRNA downstream 250535 22826944 ~ 23035173 (-) True unc5a
XM_026947036.2 mRNA downstream 506640 22769639 ~ 22779068 (-) True cltb
XM_026947037.2 mRNA downstream 506647 22769639 ~ 22779061 (-) False cltb
XM_026947038.2 mRNA downstream 506651 22769639 ~ 22779057 (-) False cltb
XM_034310258.1 mRNA downstream 521837 22755981 ~ 22763871 (-) True faf2
XM_026947063.2 mRNA upstream 3395 23297949 ~ 23309411 (-) True LOC113546952
XM_026947094.2 mRNA upstream 18332 23312886 ~ 23327942 (-) False fam193b
XM_026947092.2 mRNA upstream 18332 23312886 ~ 23327941 (-) True fam193b
XM_026947013.2 mRNA upstream 35215 23329769 ~ 23338185 (-) True abhd18
XM_026947088.2 mRNA upstream 61599 23356153 ~ 23389259 (-) True LOC113546965
TU255434 other downstream 129042 23136926 ~ 23156666 (-) False G215624
TU255280 other downstream 506889 22769637 ~ 22778819 (-) False cltb
TU255282 other downstream 581229 22698413 ~ 22704479 (-) False smim13
XR_004579404.1 other downstream 865798 22409234 ~ 22419910 (-) False LOC117598969
TU255581 other upstream 29931 23324485 ~ 23327870 (-) False fam193b
TU256261 other upstream 1246281 24540835 ~ 24588450 (-) False usp7
trnad-guc_6 other upstream 1570093 24864647 ~ 24864718 (-) True trnad-guc_6
trnap-agg_10 other upstream 2389586 25684140 ~ 25684211 (-) True trnap-agg_10
trnap-agg_11 other upstream 2391073 25685627 ~ 25685698 (-) True trnap-agg_11

Expression Profile