RNA id: TU255439


Basic Information

Item Value
RNA id TU255439
length 1873
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G215624
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23134919 ~ 23156666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTTTAAGACTTTACAGATTACAATCTTCCTAATAAGTAAGAAGGTAATTAtcaaataaaattgttatagCAAGCTACAGTCAAATACAGTCATCATTCAgaatgttttttaaagaatgttttattaatcaaaAAATATGGGTCTGCACCGCTGGAAGCCTAGCAGGATAAATCAAGTCACTGTTTTAAAAGGTTTACAgattatgaaaaaaacaaatcagacaaGAGAATCATTATGATTATgaaaagctaataataaaaccaaatcATTTAACACCAAGCTAGCATCAAACACATTCTCAGTTTGAATGATCTAATATATGAGATTCATGATACTGAacttttaaaaccatttaatttaatttaatttaaatttagttCAAAGCCTATATGCCATCAAGCTTTTTAGCTGATTCATTCACAACTACTTTTCCATCAGTGTAAGTGACACCCTTGTACTTTCCACTGGTATTAAACTGCAGCACACTGCCATTATAGCAGGTAATCTTGACTATGCCATTGAAGGGGAGATCAATTGTAGCCTGGCCAGTTGTGATGTCCACATCCACAGTTTTACCTGGagggactttaacaggaaacgaGAAGAGCTCCATCTTCTCTTCAGTGGTCTCCGAAGCATATGTACTCTCAACTCCAATTCTGAATTCGTAACTTGTTGTGCCTTCTGCAATTAGTGGAATTCCTGCCTTCACTTCGAGGCTGAACATGAATTCCAGTCTGTCGGTAACAGACCAGGAGGATTTTTGGGTGATTTTTTTGGAGGTTTCAATTCTATATTCTTGCGTTTCAGTAGTGTTATTCTGGTAGGTCATGGATTTGATTTCTGCAACAGCCACTTTGGGTATCACATCATGAAGTGTGGGATACTCAACATTTGTAAGCTCAGTAGACTTGATGGTGTTAATGAACATGAAGCCTAAGCAATCAATATCTAAACCTGAGCGTCCTTTGATTCCCATGCAGATCCCAGAAGCAACATCAACTGGAACTTCTGGTTGCAGCACCCATCCTGTCAAGCGTGCAAAGAACTCCCGGGAGTGATTTGTCTTGAATTTGATGGCACCCAGACGTGTTCCATTTCCATTTGCCCAAAGTGAAAGGGAGGTGAAATGCTCCCCATCTTCAAATATAAACTCTGTAAAATTCCCATCAGGTTCACCAAACTGCTTGGACAGGCCATCAGTAAGCCAAACCTTCATGGCTTTCACTGCCAGTTACCGACCCACACCCAGATCTTTTTCAACATGGTTCCATTTTCAGTGCCATTAAACTCAAAAGGCTGTCCTCCATTCCCACCAATTTCAACAACATCTGCCAGAGAAACCAGACGCGAGCTTTGGATCAAAGTCGGTCTACTCGAGGGACGGTCCAGTCCGGCTTACGTTTCTGCATAATACATGTTAGATCAGCGGGAGCGCAGAGTTTACAGTGCTGCTGACTCGAAGACTGCAAGTCATCcagcttttttcatttctgactTTTAGATGGTGGAAGGCCGAATGCATACTGTAAAAAGTTATATACAGTGTAGAAAAGTAATTTTagacaatgaataaaatattctaaacatcaatatactacaatatatactacaatatgtatatattgtagTCAAACCCAGAAAATTACAAGACCAAggcttttcatccatttttgaGAGCCATTCTCAACTACGGACAACTTAGcatagccagttcacctacttGCCATGGTTTTTTGGTGGAGAGACGAAATcggaaaacctggaggaaacccacacaaacagtaacctgcGCTTCGGATAGAACCTGAGGCCCTGGAGCTATGATACAGCAATGCTCATCTTCCAAAGAAACTGAAATTAAACTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255407 lncRNA downstream 69118 23065567 ~ 23065801 (-) True G215608
TU255405 lncRNA downstream 76098 23058613 ~ 23058821 (-) True G215606
TU255395 lncRNA downstream 125609 23009071 ~ 23009310 (-) True G215596
TU255393 lncRNA downstream 128122 23006594 ~ 23006797 (-) True G215594
TU255388 lncRNA downstream 135453 22999221 ~ 22999466 (-) True G215589
TU255580 lncRNA upstream 169036 23312895 ~ 23315021 (-) False fam193b
TU255584 lncRNA upstream 184485 23328344 ~ 23328571 (-) True G215751
TU255588 lncRNA upstream 212430 23356289 ~ 23360239 (-) False LOC113546965
TU255745 lncRNA upstream 478517 23622376 ~ 23622605 (-) True G215895
TU255743 lncRNA upstream 565693 23709552 ~ 23751577 (-) True G215893
XM_026947083.2 mRNA downstream 99746 22826944 ~ 23035173 (-) True unc5a
XM_026947036.2 mRNA downstream 355851 22769639 ~ 22779068 (-) True cltb
XM_026947037.2 mRNA downstream 355858 22769639 ~ 22779061 (-) False cltb
XM_026947038.2 mRNA downstream 355862 22769639 ~ 22779057 (-) False cltb
XM_034310258.1 mRNA downstream 371048 22755981 ~ 22763871 (-) True faf2
XM_026947066.2 mRNA upstream 141849 23285708 ~ 23297814 (-) False dok3
XM_026947065.2 mRNA upstream 141849 23285708 ~ 23294554 (-) True dok3
XM_026947064.2 mRNA upstream 141849 23285708 ~ 23294551 (-) False dok3
XM_026947063.2 mRNA upstream 154090 23297949 ~ 23309411 (-) True LOC113546952
XM_026947094.2 mRNA upstream 169027 23312886 ~ 23327942 (-) False fam193b
TU255280 other downstream 356100 22769637 ~ 22778819 (-) False cltb
TU255282 other downstream 430440 22698413 ~ 22704479 (-) False smim13
XR_004579404.1 other downstream 715009 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other downstream 715009 22413667 ~ 22419910 (-) True LOC117598969
TU255018 other downstream 770654 22339042 ~ 22364265 (-) False LOC117598814
TU255581 other upstream 180626 23324485 ~ 23327870 (-) False fam193b
TU256261 other upstream 1396976 24540835 ~ 24588450 (-) False usp7
trnad-guc_6 other upstream 1720788 24864647 ~ 24864718 (-) True trnad-guc_6
trnap-agg_10 other upstream 2540281 25684140 ~ 25684211 (-) True trnap-agg_10
trnap-agg_11 other upstream 2541768 25685627 ~ 25685698 (-) True trnap-agg_11

Expression Profile