RNA id: XM_034309655.1


Basic Information

Item Value
RNA id XM_034309655.1
length 2843
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC113546904
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22678164 ~ 22696823 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCAGCCTTAGTcatgagactgtgtgtgtttggggttaCTCACTGAGATGATTCACTGTTtataatatcaacatttacagAACATGGCTTCCAGCTCAGTCTCGCCAGAGCCACTTGATGTCCTTCAGGACAGTGACAACGATGATGGTGGAAACAACCTATCGGGTCTGGAGGACGAGGACAACGATGAAGAAATTATGGATCTGGATGAGGATGATTCTGCCGATGAaagtgatgatgatgagtggcACACACCACCGGCGAAGAAGCCACATGAGTCTGCTCAGTCAAAATCTCCCCTGGCATGGAAGACACCCGAAGACACTGACGTGGCTCCACCAACGATTCGGTTCCGGCCTGCGCGACCTCCTGGGGTGCAACTGAATCCGGCAGACACCCACACTCCTCTGGAGTTGTTCAAACTCTTCTTCTCTCCAGATGTTGTGGCAACATTGTGTCAGAACACCAATAAACAGGCTGCCAAGAACATCGAACAAGGGGGAAAGTACAAATGGACTGCTTTGACAGTAGACGAGTTGTACAAGTACATCGGACTCATTTTTTACATGGGCCTGATCAAGCTGGACCACATCCAAGATTACTGGCGgcaaaacaacattttttccaTCGCCTTCCCAGGGATGGTGATGACGAGAGACAGATATAGGACCATTTCCTGGAATGTGCACATGAGCGATCCGGATGAGGACCAAGAAAACGATATTAGGCGGGGGACACCTCAGTATGACCGACTGTTCCGGGTGAAACCGCTCATGGACCAGATTAGGGAGGCCTGCAAAACCTTTTATCATCCACAGAGAAACCTTGCGGTGGACGAACGAATGGTAGCAACTAAGGCAAAGACGGGCATGACGCAGTACATGAAGAGAAAGCCCACCAAATGGGGCTTCAAGTTATTTGTAATGGCCGACTCGAGCAACGGATACACAGTGGATTTTGCTGTGTACACGGGAAAGGGCGGCTCTTACACGGGAAAGGGCAGCTCTTACACAGGACAAGGGATTTCATACGACACTGTGATGTCATTCATGGATCATTCCTTCTTGGGTTCCGGGTACCATGTGTACATGGACAATTTCTACACGAGCCCAAAGCTATTCAGGGACCTGCACGCTCAGAAATTTGGCGCTTGCGGGACGTACAGGGACAAGAAGAAGGACTGTAAGGACGGCCTGAGCACTATGTTGAACGCTCTCGATAGAACGTCACGCAGGGGAGACTTCAGGTGGATCAGGGATGGTCCTCTGGTGTTTGTGAAGTGGATGGATGCTCAAGAAGTCTCCGTTTGCTCCACGATCCATGCAGCCTTCAATGGCGAGACGATACAACGGAAGGTGAAGACCCCGAAAGGGACCTGGGACACGCAGACATTTTCATGCCCTACTCCTGTCCTCAAGTACAACGAACACATGGGAGGGTGGACTTGTCTGACCAACTCATCCAGTACTACACAACCCAGCACAAGACCATGAAATGGTACCGGAAGCTGTTTTTGCACTTCTTGGACATTGCGGCTACGAACGCATACATCTTACACAAAGAGCTTGCGTCGCAACAACTGCGTGATGCCTTGACACACAAAGCGTTCATAGAAGAGCTGACTGCACAGCTGTGCGGCATGTCACAGAAAATCCCTTCAAAACGGGCCAGCTGTGATCATGTACCGGTGCCCGTGGCCAAACTGTCTAGAGACGTCCGTCAGGTGGCTTCGCAAGGTCGCAGGACCTGCGTCCTCTGCCGATTGCAGCGTTCTAAAAAGCATAACACTCCATGGAAGTGTAGTAAGTGCGACGTTCCTCTTTGCCTACAGCTGACTAGAAACTGTTTTGGTGAATGGCATTGTAACTGaagtaaagtgaaaaaaaataaccacctATAATAGAATGGTGAATAATTTCATTAAAGGGATatttcacccaaaaatgaaaattctgtcatcatTTACTCGCCCTCATGTCGTTCCAAACCCATAAGACTTTCGTTCATCTTCGgaacacaaatgaagatatttttaatgaaaccagGGAgatttctgtctctccattgACAGTCCATGTAACCAAAACTTTCAAGCTCTAAAAATTCATAAAGGTATCGTAAAAGTAATCCATGTGACTTCAGTGGTTTAATCCCAATTTTATAAAAGCGATACGAATGCTgtgtgcgaaaaaaaaaaaaagtctttattcCCAAAATATCTTCACTTCCGCATAGATCTCCGACATGCTATGTTGACGAGAGAGCGGACGTTCCAGATACAACTGGTCCCGGAAGCTCTGCACTGCTTAAAGCTTCGTTCATTACATTCTAAGTTGATTTTGCTTTAGGTCttggtttatttttcaaaatggtgCTAAAATATGTTCTCTAGATGCCAGACTCTTGAGAAACTTTCTctgctgtaaaatataaaatgtttattgctagtatttatttatagtattttacaAGGGACACTAGAAACAACCTAATATTTCCGAAATATGGTGTAAAAAATGTTTCAGCATTAATAACTTATTTATAACTTGTACAAATTatctggaagatatgtagaataCGATAAAAAGCAATGGGTTAAACCATGGCTTTATCATAAGttgctgagaaaacccatttggaaaaacTCCTGTCTGgtatgcttttgtttgtttggtgcatgtcctgtcagtcattttataggcACTATACGGGTCACCCAAGACCGTGTGAGTGAAACTTCATGAACCTGGGtaggaatcattcaaatgtcatattcatgaaaccagtttggtTCATtctcatgctggaagtagccattagaagatgagtaaattgtggccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255043 lncRNA downstream 134184 22446122 ~ 22543980 (-) True G215262
TU255051 lncRNA downstream 170301 22475021 ~ 22507863 (-) True G215269
XR_004579407.1 lncRNA downstream 197242 22477976 ~ 22480922 (-) True LOC117598972
TU255027 lncRNA downstream 280413 22390356 ~ 22397751 (-) True G215249
TU255019 lncRNA downstream 333647 22339042 ~ 22344517 (-) False LOC117598814
TU255306 lncRNA upstream 36906 22733729 ~ 22734095 (-) True G215507
TU255308 lncRNA upstream 40453 22737276 ~ 22737479 (-) True G215509
TU255292 lncRNA upstream 57737 22754560 ~ 22755107 (-) True G215494
TU255279 lncRNA upstream 72814 22769637 ~ 22778819 (-) False cltb
TU255287 lncRNA upstream 84500 22781323 ~ 22815252 (-) False G215489
XM_026947051.2 mRNA downstream 1416 22661560 ~ 22676748 (-) True LOC113546927
XM_026947008.2 mRNA downstream 33901 22629881 ~ 22644263 (-) True trak1b
XM_034309656.1 mRNA downstream 36326 22629881 ~ 22641838 (-) False trak1b
XM_034309657.1 mRNA downstream 36567 22629881 ~ 22641597 (-) False trak1b
XM_034309658.1 mRNA downstream 41543 22629881 ~ 22636621 (-) False trak1b
XM_026947021.2 mRNA upstream 1581 22698404 ~ 22704483 (-) True smim13
XM_034309816.1 mRNA upstream 9731 22706554 ~ 22729853 (-) True cdhr2
XM_034310258.1 mRNA upstream 59158 22755981 ~ 22763871 (-) True faf2
XM_026947036.2 mRNA upstream 72816 22769639 ~ 22779068 (-) True cltb
XM_026947037.2 mRNA upstream 72816 22769639 ~ 22779061 (-) False cltb
XR_004579404.1 other downstream 258254 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other downstream 258254 22413667 ~ 22419910 (-) True LOC117598969
TU255018 other downstream 313899 22339042 ~ 22364265 (-) False LOC117598814
XR_004579410.1 other downstream 356431 22321174 ~ 22321733 (-) True LOC117598975
LOC117598862 other downstream 357889 22319544 ~ 22320275 (-) True LOC117598862
TU255282 other upstream 1590 22698413 ~ 22704479 (-) False smim13
TU255280 other upstream 72814 22769637 ~ 22778819 (-) False cltb
TU255434 other upstream 440103 23136926 ~ 23156666 (-) False G215624
TU255581 other upstream 627662 23324485 ~ 23327870 (-) False fam193b
TU256261 other upstream 1844012 24540835 ~ 24588450 (-) False usp7

Expression Profile