RNA id: XM_034309658.1


Basic Information

Item Value
RNA id XM_034309658.1
length 3333
RNA type mRNA
GC content 0.52
exon number 12
gene id trak1b
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22629881 ~ 22644263 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAAGATGAGCTTTTGCAGTTCTACACCAACGCAGCGGAGGAGAGCGAGGAGGATGCCACGTCTTCGCAAGGCGCCATGGTAACAAGCtgctctgtgttgtgtttgcgGGGTCAGAGGTCGGCATGGCAGGATGCCGCTGCCTTTCCTGAGCGGCTCCAATGTGGATGTGCTTCAGAAGAAACTCAGAGACCTTGAAGAGGAGAACCTCTCTCTCCGATCAGAGGCGAGCCATCTgaagtcagagacagagacgtATGAAGAGAAAGAGCAGCAGCTGGTGAACGACTGTGTGAAGGAACTCAGACAGTCCAGTCTGCAGATCTCCACCATAGCGGAGGAACTGACCAGGAAGACAGAGGATGCGGCTCGCCAGCAGGAGGAAATCACACACTTGCTCTCGCAGGTTGTCGACTTGCAGAAAAAGGCCAAAACGCATGCTCTGGAGAATGAGGAGCTCTCTCAGCATCTGGTGGCAGCTAAAGACGCCCAGAGGCAACTCACAGCAGAGCTTCAGGAGCTCGGGGAAAAGTATTTGGAGTGTATTGAGATGCTGCATGAGGCTCAGGAAGAGCTGAAGAACCTGCGGAACAGGAGTGTGTCTGCTGGAACACCGCGACGTTACCATCCTCTTGGACCGTTCCCTAtggactCTCTGGCCGCTGAAATTGAGGGCACTATGAGGATGGAGTTGAGTCATGAGCACCCTGAACACGAGGAGCAAAAGGTGCGTCATAAGCGTGTGTTTGAGACGGTTAAAAACATTAACCAGTCAGTCAGGCAACGCTTGCTGCCTCCGCCTTCTGCTAATATCCCAGGCTCCAATCAGACACTCTCGTCCCTAAGTTCCGCCCTCTCTGACAGCAACACTGACAACATGGCTGCCCTTGATAACCGTGAACAAAGCATGCTCCTGGAGGCGGAGTCATCAGATGCCAGTTCTGATGGCCCTGAGAAGCGTTCTAGCTCAGAAGACCTGAAGCTGGCATTGCGCCGGCTCTCACTGCGCCGGCAGAACTGCCTGAGTGAACGCCGTTTCTTTGAGGAGGCGCGTGAGAGGAGGCATCATGATACTCCACTTCTGTCTGGCATCGTGTCTGGAGAGAGCATCATGTCGCTGGGTGTGTGGCCGAGCCGGCCGTATCTCCCAGACAAGCTGCAGATTGTCAAACCATTGGAAGgCTCCGCCACCTTGCAGCACTGGCAGCAGTTAGCTCAGCCTAACCTAGGCGGGATTTTGGACGCCCGTCCCGGTGTCGTCCCTAAGGGTTTCCGTCCTCTGGAACTCGATCTAGAGGAGGTCTATCACTACAGCGACTATGAGGAGGATGAGCCAGGAGAGCAGTATTTCCAGAACCttcccaccaccaccactgcaGCCAATCCCGGTCTTGGCCACGCCCCGTCAGCCTCTCCGTCCCCCTGCCTCAGCACTGGCCATGTCTCTGCAGAGTTCTCAGTGCACTACCCGGGTAAGTGCATGGCCCACACCAGCTCCACTTACACGTTCACTACCTGCAGGATCCTCCACCCATCTGATGAGGTCACTAGAGTCACTCCCAGTCTAAACCCTGCCCCAACCTCCTCATGTGCGATGTCATCCAGCCTTCGCTCCACCCCCGCGGCCACGCCCTGCACGCCACGCCGTTTAAGCCTCTCCCAGTCCCAGTCCTTCACCAACTTACGTGACTCTACGAAGACCTTCAGCACGTCACTGGGGTTAGTGCGCCTCCTACAGGAGCGTGGGATCTCTGCAGCCGTCTATCAGCCGCTTAGCTGGGACAGGGTGAGTGGTGGTGTCCATTTATCCACCTCTGTCCTCCCTCCATCGTCCCCTCCGGACTCTCAGAAACCCTCCACTCCACCAAACTCCCCTGCCCGACACACTCCAAGCCCCCACGCTGTTGATCCGGACAACCCTGCTGACTTTTCGTTCAAAAGCCCATCCTATGAGAACTTCCTAGCCTCTAAGCCAGCACGGTCCATTCTGAAAGAGGTGGCGGGGGTGACTCAGGCGAGGGATTGTGAGAGCCAGACGGATGTCAGCGTGTACAACCTGAACCTGGTGGATAAGCTAAAGAGGCTGGGGCTGGCAAGTCCAGGAGCCAGTGGGATCTCAGGGCCGCATCCCATACTGGGCCCGCTAGGTGGCCTGAGGAGGACAGGCTCTCCTTTTACACCCCTAAATGAAGGGTTAAGGCGCAATCGAAGCTACCCAGCTGTGGTCGGAGCAAGCATGGCTATGAAGGGCCCTGGACCCCAAGGAGACGAGATGATCCTAGCTCCGAAACTTCCCAAGCAGACTAGTCTCAAATAGACTACACATAAACACTcaaaatactgtattatatgtatataagttTAAGTTATGCCCTCCAAAAGCAAAATTCAGCCTGTTTGCACTAGAGCGCTCTCTGACTTGAAAACAGAGTCCTCTCTTACCTGCCCAtaaccctatatatatatattacgcACAGTAGTGTGCAAAACCCAAAGTAGAGCTTCAACACTTTCCCTCACAGACATTTAGGGGGTAATACCATAAAGAAAGAACCATCAAGCATTAAACCAGGCAAAATCAATATAATTCAGGGTAAATACAGGAATTTCACCAACACTACATGGCCAATAGTATATGGACACcagatcatcacacccatatacagtttgcttgttgaacatctaaTTCCAAAagcatgggcattaatatggagttttGGAGTGTGGttttggggatttgtgatcattcagtcacaagatcattagtgagatcaggcactgatggtgGATGAGGAGGCCTAGTacgcagttggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctatgtAGGCCACTCaaattcttccacaccaaacttggcaTGCCgtatcttcatggacctcgtTTTGTGTACAGAGGCatggtcatgctggaacaggtttggtcctcttagttccagtgaaggaaaatcttaatgctacagcatacaaaggcattctatacaattgtgtgcttccaaatttgtgccaacggtttggggaagaaccacaaatgggtgtgatggtcaggtgtccacaaactttgggccatatagtgtacagaAGGGGTGAGCAATATAGCAATATTTTAAGAGATTTTCACGATATATGATATGCAGGGATGGATTACGGACCGGGCCTATTGGGCACTGACTAGCAATTAGACTGACTGGCAATTATGCTAagtcacacacaacacatatcAACATCAGCGAGTTAATAGAACATGAGCCAATGAATGTAAAGCCACTGATTCTGAAATAAATTTGGAAATgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255043 lncRNA downstream 85901 22446122 ~ 22543980 (-) True G215262
TU255051 lncRNA downstream 122018 22475021 ~ 22507863 (-) True G215269
XR_004579407.1 lncRNA downstream 148959 22477976 ~ 22480922 (-) True LOC117598972
TU255027 lncRNA downstream 232130 22390356 ~ 22397751 (-) True G215249
TU255019 lncRNA downstream 285364 22339042 ~ 22344517 (-) False LOC117598814
TU255283 lncRNA upstream 19921 22656542 ~ 22704479 (-) False smim13
TU255306 lncRNA upstream 97108 22733729 ~ 22734095 (-) True G215507
TU255308 lncRNA upstream 100655 22737276 ~ 22737479 (-) True G215509
TU255292 lncRNA upstream 117939 22754560 ~ 22755107 (-) True G215494
TU255279 lncRNA upstream 133016 22769637 ~ 22778819 (-) False cltb
XM_034309681.1 mRNA downstream 47779 22552724 ~ 22582102 (-) True topaz1
XM_026947051.2 mRNA upstream 24939 22661560 ~ 22676748 (-) True LOC113546927
XM_034309655.1 mRNA upstream 41543 22678164 ~ 22696823 (-) False LOC113546904
XM_026947018.2 mRNA upstream 41543 22678164 ~ 22689382 (-) False LOC113546904
XM_034309654.1 mRNA upstream 41543 22678164 ~ 22689382 (-) True LOC113546904
XM_026947019.2 mRNA upstream 41543 22678164 ~ 22683103 (-) False LOC113546904
XR_004579404.1 other downstream 209971 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other downstream 209971 22413667 ~ 22419910 (-) True LOC117598969
TU255018 other downstream 265616 22339042 ~ 22364265 (-) False LOC117598814
XR_004579410.1 other downstream 308148 22321174 ~ 22321733 (-) True LOC117598975
LOC117598862 other downstream 309606 22319544 ~ 22320275 (-) True LOC117598862
TU255282 other upstream 61792 22698413 ~ 22704479 (-) False smim13
TU255280 other upstream 133016 22769637 ~ 22778819 (-) False cltb
TU255434 other upstream 500305 23136926 ~ 23156666 (-) False G215624
TU255581 other upstream 687864 23324485 ~ 23327870 (-) False fam193b
TU256261 other upstream 1904214 24540835 ~ 24588450 (-) False usp7

Expression Profile