Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598880 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21699292 ~ 21699794 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | description |
|---|---|
| ko00601 | Glycosphingolipid biosynthesis - lacto and neolacto series |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598880 | True | 385 | V_segment | 0.49 | 2 | 21699292 | 21699794 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598896 | NA | coding | downstream | 5658 | 21693183 ~ 21693634 (-) |
| LOC117598776 | NA | coding | downstream | 7716 | 21685697 ~ 21691576 (-) |
| LOC117598954 | NA | coding | downstream | 14647 | 21684024 ~ 21684645 (-) |
| LOC117598868 | NA | coding | downstream | 22485 | 21675638 ~ 21676807 (-) |
| LOC117598919 | NA | coding | downstream | 25962 | 21672822 ~ 21673330 (-) |
| topaz1 | topaz1 | coding | upstream | 852930 | 22552724 ~ 22582102 (-) |
| trak1b | LOC108275079,LOC108414239,LOC107706145 | coding | upstream | 930087 | 22629881 ~ 22644263 (-) |
| LOC113546927 | ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 | coding | upstream | 961766 | 22661560 ~ 22676748 (-) |
| LOC113546904 | LOC108258503 | coding | upstream | 978370 | 22678164 ~ 22696823 (-) |
| cdhr2 | NA | coding | upstream | 1006760 | 22706554 ~ 22729853 (-) |
| G215168 | NA | non-coding | downstream | 53398 | 21645119 ~ 21645894 (-) |
| G214980 | NA | non-coding | downstream | 64428 | 21634658 ~ 21634864 (-) |
| G214978 | rest,LOC106604639 | non-coding | downstream | 67425 | 21628129 ~ 21631867 (-) |
| G214977 | NA | non-coding | downstream | 77371 | 21620678 ~ 21621921 (-) |
| G214976 | NA | non-coding | downstream | 82460 | 21616602 ~ 21616832 (-) |
| G215194 | NA | non-coding | upstream | 23677 | 21723471 ~ 22134451 (-) |
| G215217 | NA | non-coding | upstream | 322292 | 22022086 ~ 22078908 (-) |
| G215171 | NA | non-coding | upstream | 325689 | 22025483 ~ 22082843 (-) |
| G215221 | NA | non-coding | upstream | 380368 | 22080162 ~ 22136007 (-) |
| G215224 | NA | non-coding | upstream | 421662 | 22121456 ~ 22133365 (-) |
| LOC117598964 | NA | other | downstream | 1118 | 21697743 ~ 21698174 (-) |
| LOC117598877 | NA | other | downstream | 3933 | 21694872 ~ 21695359 (-) |
| LOC113528016 | thegl | other | downstream | 340102 | 21352281 ~ 21359190 (-) |
| slc16a2 | LOC108279893,LOC107596364 | other | downstream | 426785 | 21236802 ~ 21272507 (-) |
| fgf2 | fgf2,LOC107717315 | other | downstream | 671211 | 21014439 ~ 21028081 (-) |
| LOC113546939 | NA | other | upstream | 196 | 21699990 ~ 21700504 (-) |
| LOC117598882 | NA | other | upstream | 2787 | 21702581 ~ 21704069 (-) |
| G215192 | NA | other | upstream | 6696 | 21706490 ~ 21707052 (-) |
| LOC117598971 | NA | other | upstream | 8859 | 21708653 ~ 21709423 (-) |
| LOC117598779 | NA | other | upstream | 42357 | 21742151 ~ 21742595 (-) |
