LOC117598908


Basic Information

Item Value
gene id LOC117598908
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22250090 ~ 22250613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598908
atgcaaatctcCATCTCCTCTTGTAATATTAGCACCGTGCTTATCTAGAGAGGAAGCGCTTCTCATTAGTCCTCCttcaacacaaacatgtttgcttcagctccactgctgctgctggctctCGCCCCCTatGTGTTCTGTGCTACTGAGCTCATCCAGCCAGACTCAGTGCTTATAAAGCCAGGAGAGACTTTAACCATCACCTGTAGAGTGTCTGGAGCTTCTATCACTGATAGCAGCAGCCACTATGGAACAGGTTGGAttcgacaacctgcaggaaaagctctggagtggacTGCATACATCAAGCATGATGGGGCTACATtttacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598908 True 441 V_segment 0.46 2 22250090 22250613

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 556456 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 558514 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 565445 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 573283 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 576760 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 302111 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 379268 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 410947 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 427551 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 455941 22706554 ~ 22729853 (-)
G215228 NA non-coding downstream 52678 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 109950 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 114083 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 116725 22121456 ~ 22133365 (-)
G215171 NA non-coding downstream 167247 22025483 ~ 22082843 (-)
G215249 NA non-coding upstream 139743 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 195509 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 224408 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 227363 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 483116 22733729 ~ 22734095 (-)
LOC117598930 NA other downstream 2875 22246772 ~ 22247215 (-)
LOC117598897 NA other downstream 5504 22244064 ~ 22244586 (-)
LOC117598902 NA other downstream 9141 22240497 ~ 22240949 (-)
LOC117598907 NA other downstream 17622 22231972 ~ 22232468 (-)
LOC117598926 NA other downstream 19488 22230158 ~ 22230602 (-)
G215235 NA other upstream 318 22250931 ~ 22272210 (-)
LOC117598967 NA other upstream 3820 22254433 ~ 22254852 (-)
LOC117598923 LOC108275153 other upstream 10387 22261000 ~ 22261463 (-)
LOC117598886 NA other upstream 14046 22264659 ~ 22265110 (-)
LOC117598869 NA other upstream 17659 22268272 ~ 22269215 (-)

Expression


Co-expression Network