LOC117598923 (LOC108275153)


Basic Information

Item Value
gene id LOC117598923
gene name LOC108275153
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22261000 ~ 22261463 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598923
cagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTTTCATATTCACTTACTAGCTATAATACACATTGGATCCggcaacctgcaggaaaagctctggagtggattggaTACATCAGTTACAGTGGGAGTACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaagagagtcacagtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598923 True 371 V_segment 0.46 2 22261000 22261463

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 567366 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 569424 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 576355 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 584193 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 587670 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 291261 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 368418 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 400097 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 416701 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 445091 22706554 ~ 22729853 (-)
G215228 NA non-coding downstream 63588 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 120860 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 124993 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 127635 22121456 ~ 22133365 (-)
G215171 NA non-coding downstream 178157 22025483 ~ 22082843 (-)
G215249 NA non-coding upstream 128893 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 184659 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 213558 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 216513 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 472266 22733729 ~ 22734095 (-)
G215184 NA other downstream 3750 22225641 ~ 22257250 (-)
LOC117598967 NA other downstream 6148 22254433 ~ 22254852 (-)
LOC117598908 NA other downstream 10387 22250090 ~ 22250613 (-)
LOC117598930 NA other downstream 13785 22246772 ~ 22247215 (-)
LOC117598897 NA other downstream 16414 22244064 ~ 22244586 (-)
LOC117598886 NA other upstream 3196 22264659 ~ 22265110 (-)
LOC117598869 NA other upstream 6809 22268272 ~ 22269215 (-)
LOC117598948 NA other upstream 8971 22270434 ~ 22270943 (-)
LOC117598813 NA other upstream 13598 22275061 ~ 22275895 (-)
LOC117598921 NA other upstream 15563 22277026 ~ 22277469 (-)

Expression


Co-expression Network