LOC117598948


Basic Information

Item Value
gene id LOC117598948
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22270434 ~ 22270943 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598948
aatctcCATCTCCTCTTGTAATATTAGCACCGTGCTTATCTAGAGAGGAAGCGCTTCTCATTAGTCCTCCttcaacacaaacatgtttgcttcagctccactgctgctgctggctctCGCCCCCTatGTGTTCTGTGCTACTGAGCTCATCCAGCCAGACTCAGTGCTTATAAAGCCAGGAGAGACTTTAACCATCACCTGTAGAGTGTCTGGAGCTTCTATCACTGATAGCAGCAACCACTATGGAACAGGTTGGAttcgacaacctgcaggaaaagctctggaatGGATCAATTTAATTTACTATGATGGGAATATTGAGAAGAAAGATTCACTTAAAAACAAGTTTGTCGTCTCTCGAGACACTTCCAGTAACACCGTGACCTTACGGGGACAGaacatgcagactgaagacacagctgtgtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598948 True 427 V_segment 0.45 2 22270434 22270943

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 576800 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 578858 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 585789 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 593627 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 597104 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 281781 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 358938 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 390617 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 407221 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 435611 22706554 ~ 22729853 (-)
G215228 NA non-coding downstream 73022 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 130294 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 134427 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 137069 22121456 ~ 22133365 (-)
G215171 NA non-coding downstream 187591 22025483 ~ 22082843 (-)
G215249 NA non-coding upstream 119413 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 175179 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 204078 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 207033 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 462786 22733729 ~ 22734095 (-)
LOC117598869 NA other downstream 1219 22268272 ~ 22269215 (-)
G215187 NA other downstream 1342 21676271 ~ 22269092 (-)
LOC117598886 NA other downstream 5324 22264659 ~ 22265110 (-)
LOC117598923 LOC108275153 other downstream 8971 22261000 ~ 22261463 (-)
G215184 NA other downstream 13184 22225641 ~ 22257250 (-)
LOC117598813 NA other upstream 4118 22275061 ~ 22275895 (-)
LOC117598921 NA other upstream 6083 22277026 ~ 22277469 (-)
LOC113546926 NA other upstream 41844 22312787 ~ 22313871 (-)
LOC117598862 NA other upstream 48601 22319544 ~ 22320275 (-)
LOC117598975 NA other upstream 50231 22321174 ~ 22321733 (-)

Expression


Co-expression Network