fgf2 (fgf2,LOC107717315)


Basic Information

Item Value
gene id fgf2
gene name fgf2,LOC107717315
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21014439 ~ 21028081 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254170
aaagaaggaagaaaagaagcaagagggggagagagagggagagatggcgAGTGGAGAGATCTCCACTCTTCCCTCGGCTCCGGCCGACAGCTTTCCCCCGGGCCACTTCAAAGAGCCCAAGCGCCTGTACTGCAAAAACGGAGGCTACTTCTTGCGCATCAACCCGGACGGACGAGTGGACGGCATCCGCGAGAAAAACGACCCCAACATTCGGCTGCAGCTCCAGGCGACTGCAGTGGGAGAAGTCGTCATTAAGGGTATCTCGGCTAATCGCTACCTTGCGATGAGCTCTGAGGGGAGGCTATTTGGAACGAGACGAGCAACCGATGAATGTTATTTCTTCGAGCGCCTGGAGGCGAATAACTACAACACGTACAGATCACGGAAATATCCGAACTGGTATGTTGCGCTAAAGAGGACGGGACAATACAAGAGCGGAGCGAACACAGGACCCGGACAAAAAGCTATCCTCTTCCTCCCGATGTCAGCCAAGAGCTAAACTTCATCTGTgtgagtttttatttgtttatgtgaaaacaaatgtCAGGCCAGAATATGGACAATTAATCTTTTTGGGACATtaatgaaggtttttttttttaaagaaatgttggGCAAGATTCATACAAGAAACTGAATTACTTACAAACATGAAATTATCACAGTGCTTAACCTGCTTATCACTAATGAATCATTTTAGGCCATTAATACGTGATTGCAActtgtgaatttttttgaaCTCATCATTTTGTCTGAGATGTGAATAGAAATGTGGACAAACTAAAGAGGTTCCTTAAAACTGgtcattttttaacataaaaatatagcCTTAGATCTAACAgcaattaaataaagtttttttctaAAGCAACTAACTATGTAGAAATTAACCACAGCTTCATCTGTGTAATTCTTCATGACCaatttaatttactaattaaccaatttaatttactttttcttttgtagAGTCCTATTCATTTTCTGAAAATTGTTGtaatttaaaatgcttttgtaaaattttgttaatttaatcTAGATTTAACCTAGAAAAAGGGAGAAAGTGCTgaacttgatttttttccaaCTGAAAATTATAGCTAATTTATCATTTTAGGCCAGTAAACACTACAATAACAACAGGATTAAGCCCCAGTGTGCTGAGTCTTGTACTTTAATggtttgtaattttgtaaatttaaaatgcttttcAGAAATGTAATACTTTGTTCCTAccaaaattgtaattatttgaCCTTAAGTTTCATGTTATAACGTCAACCCTAAATCATTAACTTAACCAAAAGTGTTTACAGAACATTGAACAAAACATTATCACCCAGGCTGATGTTTCACCATCTGCAGCCAATCAGTGTCACTAAATGAGGCCAACAGGAAGTTCTCCATCTGTAAGCTTGGCCTGGAGCTCTGTGATCTCatgtttttctgctcaacaAAACAGAAGCATGAATGAAATCTACCATACACCATACGTTTCCATCACATCGAACAgccattttaacagattttCTACCATGGATGTTGCATCTACTAGTGGGTAGGTAAAAGAAGTGTTTAGATATACCTTAAAAGTTATGTTGAAACAATTTTACTTTGTTCAACTAAGTTATTTAatagttatttaatatttcatacacATTAACATCAAACTTAAGTGACAAGCTTAAGTTAACAGACAAAAATGGCCATGTAGTAAAATCTGTTTAACATTAATCTACATCTATTCCATaacaaaacaatcaaataaaaacactgaaaaaaacttgaaacattcacaaatttttgaaacaattatttaattggcaaaagtgtttttttttttaattttgaaagttattttcattttttaaaagcctCTTAATGTTTATGACTGCAGCTcctgtacatttttaaagaatgtcatGACTAAATAATGTGAGTTTAAAATATGCTGCTTCTATATATATCTTCCTTTCTAGCTTTTAGTGTGTATAGATCAAATTGTGCTGTAAATGAGATTttatgtgagaaaaaaaaaacactaaatattgtcgatgtatgtatgtagttaAACTCTAACAGTATGGCAATATATTAACTTTCTTTGatatgactgtatatacaatatttacattaaatactgtatttaaGTCCATATATTTCAGGCAATCACTGACTTCCTGCTTAAAAGTGAAgaattttaaattcaattttttttctagaatatGACGAAATCCAGTCATTATTAACATCAAAGTTAttaattaggttttttttttattggaaaatagtggaaaaacagaattttagaaaagtcttaaaaaaaacaaaactttgtaCTGCAGTTATAtcaacattttataaaatttaacaatttaacaatgTAACAATGTAATGTTTGCAACTGCAAAATGCATAGTGTAACGgaatttttaaaactaaattagCCTGTGTGTATTATCGTATTTATTAGCTAGGTCACGACAGGGCCtgttgtaataggaaaataatcaacaccacaTCATGAGgtgttttttcttcttactGATATCACAGCAAAgtgccaacaattacactttttaacttgttaaataatgacatcatacttttatgtgtttatagttacatttaatgttgtcgaACACAGCAAAACATATAAGTTTACTTTATTACAAATTATGTAGACTTTCCCATGATGgacagctttacctccgactATTACACAGTGCAGATgcttccataaaggttaaataaatggTCTCCtt
>XM_026917306.2
ACACTTTAGTTTCAGAAGACAACAGGACGCACGCACTCGCACGTGCCTGAGGGCAAGTCTCGACTGccccatcatcatcttcatacTAATGCTTTAGGACGATCTTAAGCGTGAATTTCAACACAGTCCAAACTATaggagtgagtgagcgagtggaggaggagaggagagctgGATTGGGGGGCGGCGTAGCTGAGAGGCCACAGAGGGGGGTTCCAGCATTACTGAGAGGGCTGGACAAGTGAAAGAgcagaaaagaaggaagaaaagaagcaagagggggagagagagggagagatggcgAGTGGAGAGATCTCCACTCTTCCCTCGGCTCCGGCCGACAGCTTTCCCCCGGGCCACTTCAAAGAGCCCAAGCGCCTGTACTGCAAAAACGGAGGCTACTTCTTGCGCATCAACCCGGACGGACGAGTGGACGGCATCCGCGAGAAAAACGACCCCAACATTCGGCTGCAGCTCCAGGCGACTGCAGTGGGAGAAGTCGTCATTAAGGGTATCTCGGCTAATCGCTACCTTGCGATGAGCTCTGAGGGGAGGCTATTTGGAACGAGACGAGCAACCGATGAATGTTATTTCTTCGAGCGCCTGGAGGCGAATAACTACAACACGTACAGATCACGGAAATATCCGAACTGGTATGTTGCGCTAAAGAGGACGGGACAATACAAGAGCGGAGCGAACACAGGACCCGGACAAAAAGCTATCCTCTTCCTCCCGATGTCAGCCAAGAGCTAAACTTCATCTGTgtgagtttttatttgtttatgtgaaaacaaatgtCAGGCCAGAATATGGACAATTAATCTTTTTGGGACATtaatgaaggtttttttttttaaagaaatgttggGCAAGATTCATACAAGAAACTGAATTACTTACAAACATGAAATTATCACAGTGCTTAACCTGCTTATCACTAATGAATCATTTTAGGCCATTAATACGTGATTGCAActtgtgaatttttttgaaCTCATCATTTTGTCTGAGATGTGAATAGAAATGTGGACAAACTAAAGAGGTTCCTTAAAACTGgtcattttttaacataaaaatatagcCTTAGATCTAACAgcaattaaataaagtttttttctaAAGCAACTAACTATGTAGAAATTAACCACAGCTTCATCTGTGTAATTCTTCATGACCaatttaatttactaattaaccaatttaatttactttttcttttgtagAGTCCTATTCATTTTCTGAAAATTGTTGtaatttaaaatgcttttgtaaaattttgttaatttaatcTAGATTTAACCTAGAAAAAGGGAGAAAGTGCTgaacttgatttttttccaaCTGAAAATTATAGCTAATTTATCATTTTAGGCCAGTAAACACTACAATAACAACAGGATTAAGCCCCAGTGTGCTGAGTCTTGTACTTTAATggtttgtaattttgtaaatttaaaatgcttttcAGAAATGTAATACTTTGTTCCTAccaaaattgtaattatttgaCCTTAAGTTTCATGTTATAACGTCAACCCTAAATCATTAACTTAACCAAAAGTGTTTACAGAACATTGAACAAAACATTATCACCCAGGCTGATGTTTCACCATCTGCAGCCAATCAGTGTCACTAAATGAGGCCAACAGGAAGTTCTCCATCTGTAAGCTTGGCCTGGAGCTCTGTGATCTCatgtttttctgctcaacaAAACAGAAGCATGAATGAAATCTACCATACACCATACGTTTCCATCACATCGAACAgccattttaacagattttCTACCATGGATGTTGCATCTACTAGTGGGTAGGTAAAAGAAGTGTTTAGATATACCTTAAAAGTTATGTTGAAACAATTTTACTTTGTTCAACTAAGTTATTTAatagttatttaatatttcatacacATTAACATCAAACTTAAGTGACAAGCTTAAGTTAACAGACAAAAATGGCCATGTAGTAAAATCTGTTTAACATTAATCTACATCTATTCCATaacaaaacaatcaaataaaaacactgaaaaaaacttgaaacattcacaaatttttgaaacaattatttaattggcaaaagtgtttttttttttaattttgaaagttattttcattttttaaaagcctCTTAATGTTTATGACTGCAGCTcctgtacatttttaaagaatgtcatGACTAAATAATGTGAGTTTAAAATATGCTGCTTCTATATATATCTTCCTTTCTAGCTTTTAGTGTGTATAGATCAAATTGTGCTGTAAATGAGATTttatgtgagaaaaaaaaaacactaaatattgtcgatgtatgtatgtagttaAACTCTAACAG
>XM_026917307.2
ACACTTTAGTTTCAGAAGACAACAGGACGCACGCACTCGCACGTGCCTGAGGGCAAGTCTCGACTGccccatcatcatcttcatacTAATGCTTTAGGACGATCTTAAGCGTGAATTTCAACACAGTCCAAACTAgagtgagtgagcgagtggaggaggagaggagagctgGATTGGGGGGCGGCGTAGCTGAGAGGCCACAGAGGGGGGTTCCAGCATTACTGAGAGGGCTGGACAAGTGAAAGAgcagaaaagaaggaagaaaagaagcaagagggggagagagagggagagatggcgAGTGGAGAGATCTCCACTCTTCCCTCGGCTCCGGCCGACAGCTTTCCCCCGGGCCACTTCAAAGAGCCCAAGCGCCTGTACTGCAAAAACGGAGGCTACTTCTTGCGCATCAACCCGGACGGACGAGTGGACGGCATCCGCGAGAAAAACGACCCCAACATTCGGCTGCAGCTCCAGGCGACTGCAGTGGGAGAAGTCGTCATTAAGGGTATCTCGGCTAATCGCTACCTTGCGATGAGCTCTGAGGGGAGGCTATTTGGAACGAGACGAGCAACCGATGAATGTTATTTCTTCGAGCGCCTGGAGGCGAATAACTACAACACGTACAGATCACGGAAATATCCGAACTGGTATGTTGCGCTAAAGAGGACGGGACAATACAAGAGCGGAGCGAACACAGGACCCGGACAAAAAGCTATCCTCTTCCTCCCGATGTCAGCCAAGAGCTAAACTTCATCTGTgtgagtttttatttgtttatgtgaaaacaaatgtCAGGCCAGAATATGGACAATTAATCTTTTTGGGACATtaatgaaggtttttttttttaaagaaatgttggGCAAGATTCATACAAGAAACTGAATTACTTACAAACATGAAATTATCACAGTGCTTAACCTGCTTATCACTAATGAATCATTTTAGGCCATTAATACGTGATTGCAActtgtgaatttttttgaaCTCATCATTTTGTCTGAGATGTGAATAGAAATGTGGACAAACTAAAGAGGTTCCTTAAAACTGgtcattttttaacataaaaatatagcCTTAGATCTAACAgcaattaaataaagtttttttctaAAGCAACTAACTATGTAGAAATTAACCACAGCTTCATCTGTGTAATTCTTCATGACCaatttaatttactaattaaccaatttaatttactttttcttttgtagAGTCCTATTCATTTTCTGAAAATTGTTGtaatttaaaatgcttttgtaaaattttgttaatttaatcTAGATTTAACCTAGAAAAAGGGAGAAAGTGCTgaacttgatttttttccaaCTGAAAATTATAGCTAATTTATCATTTTAGGCCAGTAAACACTACAATAACAACAGGATTAAGCCCCAGTGTGCTGAGTCTTGTACTTTAATggtttgtaattttgtaaatttaaaatgcttttcAGAAATGTAATACTTTGTTCCTAccaaaattgtaattatttgaCCTTAAGTTTCATGTTATAACGTCAACCCTAAATCATTAACTTAACCAAAAGTGTTTACAGAACATTGAACAAAACATTATCACCCAGGCTGATGTTTCACCATCTGCAGCCAATCAGTGTCACTAAATGAGGCCAACAGGAAGTTCTCCATCTGTAAGCTTGGCCTGGAGCTCTGTGATCTCatgtttttctgctcaacaAAACAGAAGCATGAATGAAATCTACCATACACCATACGTTTCCATCACATCGAACAgccattttaacagattttCTACCATGGATGTTGCATCTACTAGTGGGTAGGTAAAAGAAGTGTTTAGATATACCTTAAAAGTTATGTTGAAACAATTTTACTTTGTTCAACTAAGTTATTTAatagttatttaatatttcatacacATTAACATCAAACTTAAGTGACAAGCTTAAGTTAACAGACAAAAATGGCCATGTAGTAAAATCTGTTTAACATTAATCTACATCTATTCCATaacaaaacaatcaaataaaaacactgaaaaaaacttgaaacattcacaaatttttgaaacaattatttaattggcaaaagtgtttttttttttaattttgaaagttattttcattttttaaaagcctCTTAATGTTTATGACTGCAGCTcctgtacatttttaaagaatgtcatGACTAAATAATGTGAGTTTAAAATATGCTGCTTCTATATATATCTTCCTTTCTAGCTTTTAGTGTGTATAGATCAAATTGTGCTGTAAATGAGATTttatgtgagaaaaaaaaaacactaaatattgtcgatgtatgtatgtagttaAACTCTAACAG

Function

symbol description
fgf2 Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be located in extracellular region. Predicted to be active in cytoplasm; extracellular space; and nucleus. Is expressed in brain; eye; forerunner cell group; and kidney. Human ortholog(s) of this gene implicated in several diseases, including Parkinsonism; corneal neovascularization; diabetic neuropathy; gastric ulcer; and impotence. Orthologous to human FGF2 (fibroblast growth factor 2).

NR:

description
fibroblast growth factor 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254170 True 2765 TUCP 0.33 3 21014439 21027259
XM_026917306.2 False 2336 mRNA 0.37 4 21015122 21028081
XM_026917307.2 False 2333 mRNA 0.37 4 21015122 21028081

Neighbor

gene id symbol gene type direction distance location
spata5 spata5 coding downstream 10962 20904524 ~ 21003477 (-)
LOC113528637 fat4,LOC107717300,LOC107694441 coding downstream 317279 20607624 ~ 20697160 (-)
LOC113528321 fbxl12 coding downstream 583924 20426759 ~ 20430515 (-)
tmem107 tmem107,LOC108274527 coding downstream 589767 20419758 ~ 20424672 (-)
aurkb aurkb,plk4,LOC108431899,LOC107704466,LOC107712916,LOC107705065,LOC105908766 coding downstream 596058 20414100 ~ 20418381 (-)
LOC113528290 LOC108273900 coding upstream 53938 21082019 ~ 21143863 (-)
LOC113528020 LOC108274616,LOC107676766,LOC108242416,LOC103365636,LOC107660492,LOC107088227 coding upstream 118985 21147066 ~ 21155800 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding upstream 129399 21157480 ~ 21163061 (-)
klb klb coding upstream 137770 21165851 ~ 21174532 (-)
ints10 ints10,LOC105894096,LOC105894103 coding upstream 156881 21184962 ~ 21201869 (-)
G214626 NA non-coding downstream 110602 20903098 ~ 20903837 (-)
G214526 NA non-coding downstream 172805 20841431 ~ 20841634 (-)
G214493 NA non-coding downstream 232737 20778765 ~ 20781702 (-)
G214331 NA non-coding downstream 568691 20445523 ~ 20445748 (-)
G214325 NA non-coding downstream 575605 20436052 ~ 20438834 (-)
G214917 NA non-coding upstream 299579 21327660 ~ 21329675 (-)
G214933 NA non-coding upstream 331616 21359697 ~ 21359899 (-)
G214941 NA non-coding upstream 378789 21406870 ~ 21458183 (-)
G214947 NA non-coding upstream 391687 21419768 ~ 21468331 (-)
G214949 LOC108280967,LOC108280981,LOC108277545 non-coding upstream 407513 21435594 ~ 21505792 (-)
spry1 spry1 other downstream 109168 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 800810 20205339 ~ 20213629 (-)
slc2a9l2 slc2a9 other downstream 876226 20039787 ~ 20138213 (-)
lyar lyar other downstream 1030290 19940354 ~ 19984149 (-)
rbbp6 rbbp6 other downstream 1565880 19429217 ~ 19448559 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 208721 21236802 ~ 21272507 (-)
LOC113528016 thegl other upstream 324200 21352281 ~ 21359190 (-)
G215187 NA other upstream 648190 21676271 ~ 22269092 (-)
G215188 NA other upstream 657623 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 666791 21694872 ~ 21695359 (-)

Expression


Co-expression Network