G214325


Basic Information

Item Value
gene id G214325
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20436052 ~ 20438834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU253789
GTTTTTAGATATAAGCAGCTTAGGACGTCTAGTTGAAACACAAGTTTAAACAAGCAAagtatttgaaatgaaacatttacagCACTTTGGATTAACTAGAAATGtgtgaattcttttttttttattattattattttgcatgtaGCTAATAAACTAAACTCTAGATGACTTCAGAGGCTTATCCTTCATTTTGACTCATAGTCGGGtttaaaagtctgagaccaaaAACTGAATTTATTCCAAAAACGCTGGACAGTACaagcccacaagagacaaattGCAAGTGACACATCAGCGACTTGTCACTTCCCAGtgtgaataaaaacagttcttggtgGTTTTGGACTCCgactatacacacacagaattggCCGACATTGCTGAATGAAAGTACCTTTTGGCGAATGTGACACTCGACCTTATCGTAGGACAAATGGCtgataaatacattaaaataatttatcaaCTTGCAATAAGTCAGTTTCTTACATGGTTACAGTTACACAGTACAGTAACAgaggaagaaataaataatatgaaaaaaaaataaacatgtaacaAATTATTCAGTGCTTCTAAAAGTTTTGAGACTCAACTTTTGTCacctaaaaaaaacaggacttcACATTAATGGTTTTGAAGAGAAAAGTCAAACTAAATTGAAAAATTTCTCCCCACACcttcagtaattcagtaagCTAAGCCATGTTGCGTCCAAATTTTCTTTAGTATTCGCAAAGAGCTACAAAGCTAATAAAGCTAACAAGTAATAAATGCCTATGAATACAGATTAGCATACAGCTAACTCTGCTGAAACTGTCACGCTTACCTCTGAGGTAAATTACAGACAAGTTTCTGAAATTCTTGTTACTTGCTGTTtgaagtgagtgtgtaagtATTTCAGGATACAGTTAGCATAATGCTAATCTttctcatagctccagtgcacaAAACATTTAGACTATAATGATCAGCATCATGCTAACTTCGTAACTGCGTTTTTACCTCAGTGTTAATCTTAAACAGTCTTGCTTATATGTTGCTGACACAAAATTATCTCACAGCTGAAAACAATAtcggcagccattttgaaacAGAATTACTTACTCTTATTGATATATTAAAATCTCACTTTACTCACTTTCACTCACAAAAGACTCACTTTACAACTATATGAAATAGTGTATGTGCTAACGCTACTACATAAAGCTATTTGAAGTGTGTGACGTTTTCAGAGCACAGTTAGCATAACGCTAATCTACGTCACACCTCCAGTACAAACATTTAGACTAGAATAATCACTTTTTACCTCAGTGTTTTTTACCTCAGTCTTAAAGACTTGCTTATAGGGTGCTGACAAAATTACCTTAAAGCTGAAAACAAtagtggcagccattttgagaCAGGATCACttattattattattatatatttatatttgtaaatacgGACTCACTTTACAACTACATGAAATAGTCTATGTGCTAATGACGCCATTTGAAGCGAGTGGGATGATTTCAGAATACGGTTAGCATGATGCTAGTCAGTGCTCAGTTACTTGTTAGCAAAGTGAGCTTTGTAGCTCCTATACACAAAGTTTTATTCGATTACAATTTAATCTCAAACACTGGCTGTGTACTGAGCATTATACAGGGTATCGCTACTAAATTGCGAGATTATACATTAAACAGCAGCAATGGTTCTGGCGTTTGGTTATGGGATGGACTTGTGCTACCTATAATGCAATGGTGGCAGTAGACAGTGCATTTTACGTGAATAAATTATAACTAAACCCATGTAACTTGAAAAGGCAAttcacttttaaaatattacacagcAGATTCACCAAGCTAAAGACTAATGCTAAAGGATGCGCTCCAAATCACAGAGTCTGTGATTAGCTCTAACCACAGACTTCATAAAGAGAATTATCTATCCATATTagctcatttttttctgtggtattatacattttacattctgtAGAGAAGCGTCGATCATGCCtgcaagaaggaaaaaaaaaactagaaacattgctaatgcacaaaataaacagaaaaaacaacagctttCTGAGGTCAAACCGATCCCAGTGACAACTTATTGCACTGATTTCCTCTTAATACGGATGGCCAGtcactataaataataacaaagacGACAATAAGAACCACGACAATAGCCGTGGTAAGAATGTATGTTGGTAAAAACAGTTCTCCGCTTCACCACTGCTGCCAGCTGAAGTCGTCGTTCGACCCAAAGACGAGGAAAAAGCCCAGAATGGTGCCAAAAATGACAATGTTTCCTGTCAGGACGAGAGCGCAGGCCCCCCAGGCAATctgcacacacaaatattaattatttacgCAACAAATGGCACTAAACACACAACGCAGATGAGACCAtgcttcattctgattggtcataatTTTGCTGTGGTAAAGTAGAAAAAGGAAgaagtctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253789 True 2465 lncRNA 0.36 2 20436052 20438834

Neighbor

gene id symbol gene type direction distance location
LOC113528321 fbxl12 coding downstream 5537 20426759 ~ 20430515 (-)
tmem107 tmem107,LOC108274527 coding downstream 11380 20419758 ~ 20424672 (-)
aurkb aurkb,plk4,LOC108431899,LOC107704466,LOC107712916,LOC107705065,LOC105908766 coding downstream 17671 20414100 ~ 20418381 (-)
trnal-aag_9 NA coding downstream 23122 20412849 ~ 20412930 (-)
bod1l1 bod1l1,LOC107705061 coding downstream 23924 20400480 ~ 20412128 (-)
LOC113528637 fat4,LOC107717300,LOC107694441 coding upstream 168790 20607624 ~ 20697160 (-)
spata5 spata5 coding upstream 465690 20904524 ~ 21003477 (-)
LOC113528290 LOC108273900 coding upstream 643185 21082019 ~ 21143863 (-)
LOC113528020 LOC108274616,LOC107676766,LOC108242416,LOC103365636,LOC107660492,LOC107088227 coding upstream 708232 21147066 ~ 21155800 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding upstream 718646 21157480 ~ 21163061 (-)
G214159 NA non-coding downstream 379908 20020552 ~ 20056144 (-)
G213879 NA non-coding downstream 772290 19663337 ~ 19663762 (-)
G213716 tnrc6a non-coding downstream 1013637 19417184 ~ 19422415 (-)
G213549 NA non-coding downstream 1363067 19023758 ~ 19072985 (-)
G213407 NA non-coding downstream 1586905 18792435 ~ 18849147 (-)
G214331 NA non-coding upstream 6689 20445523 ~ 20445748 (-)
G214493 NA non-coding upstream 339931 20778765 ~ 20781702 (-)
G214526 NA non-coding upstream 402597 20841431 ~ 20841634 (-)
G214626 NA non-coding upstream 464264 20903098 ~ 20903837 (-)
G214917 NA non-coding upstream 888826 21327660 ~ 21329675 (-)
hs3st1 hs3st1 other downstream 222423 20205339 ~ 20213629 (-)
slc2a9l2 slc2a9 other downstream 297839 20039787 ~ 20138213 (-)
lyar lyar other downstream 451903 19940354 ~ 19984149 (-)
rbbp6 rbbp6 other downstream 987493 19429217 ~ 19448559 (-)
si:dkey-204f11.64 LOC108274053 other downstream 1608318 18823471 ~ 18827734 (-)
spry1 spry1 other upstream 461223 20900057 ~ 20905271 (-)
fgf2 fgf2,LOC107717315 other upstream 575605 21014439 ~ 21028081 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 797968 21236802 ~ 21272507 (-)
LOC113528016 thegl other upstream 913447 21352281 ~ 21359190 (-)
G215187 NA other upstream 1237437 21676271 ~ 22269092 (-)

Expression


Co-expression Network