Gene
RNA
| Item | Value |
|---|---|
| gene id | G213879 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 19663337 ~ 19663762 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU253270 | True | 426 | lncRNA | 0.32 | 1 | 19663337 | 19663762 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ca10b | LOC108275510 | coding | downstream | 3309 | 19641250 ~ 19660028 (-) |
| smarce1 | smarce1 | coding | downstream | 26389 | 19629991 ~ 19636948 (-) |
| prkcbb | prkcbb,LOC108260780,LOC107590404,LOC107710001,LOC107601253,LOC107689613,LOC107752983,LOC107688094 | coding | downstream | 37721 | 19518879 ~ 19625616 (-) |
| cacng3b | LOC108274869,LOC103359167 | coding | downstream | 159030 | 19471684 ~ 19504307 (-) |
| rpusd1 | rpusd1,LOC103399497 | coding | downstream | 308761 | 19349383 ~ 19354576 (-) |
| itga3a | LOC108256143 | coding | upstream | 777 | 19664539 ~ 19715587 (-) |
| cdk5r1a | LOC108275632 | coding | upstream | 67780 | 19731542 ~ 19740833 (-) |
| stx18 | stx18 | coding | upstream | 106226 | 19769988 ~ 19784395 (-) |
| LOC113528549 | cytl1 | coding | upstream | 153141 | 19816903 ~ 19824783 (-) |
| gpc2 | gpc2 | coding | upstream | 179239 | 19843001 ~ 19856203 (-) |
| G213716 | tnrc6a | non-coding | downstream | 240922 | 19417184 ~ 19422415 (-) |
| G213549 | NA | non-coding | downstream | 590352 | 19023758 ~ 19072985 (-) |
| G213407 | NA | non-coding | downstream | 814190 | 18792435 ~ 18849147 (-) |
| LOC117599003 | NA | non-coding | downstream | 1586950 | 18070785 ~ 18076387 (-) |
| G213028 | NA | non-coding | downstream | 1620058 | 18041404 ~ 18043279 (-) |
| G214159 | NA | non-coding | upstream | 356790 | 20020552 ~ 20056144 (-) |
| G214325 | NA | non-coding | upstream | 772290 | 20436052 ~ 20438834 (-) |
| G214331 | NA | non-coding | upstream | 781761 | 20445523 ~ 20445748 (-) |
| G214493 | NA | non-coding | upstream | 1115003 | 20778765 ~ 20781702 (-) |
| G214526 | NA | non-coding | upstream | 1177669 | 20841431 ~ 20841634 (-) |
| rbbp6 | rbbp6 | other | downstream | 214778 | 19429217 ~ 19448559 (-) |
| si:dkey-204f11.64 | LOC108274053 | other | downstream | 835603 | 18823471 ~ 18827734 (-) |
| LOC117598999 | NA | other | downstream | 1285974 | 18375684 ~ 18377363 (-) |
| mettl23 | mettl23 | other | downstream | 1609121 | 18050735 ~ 18054216 (-) |
| tsen54 | tsen54 | other | downstream | 1790756 | 17811613 ~ 17872581 (-) |
| lyar | lyar | other | upstream | 276592 | 19940354 ~ 19984149 (-) |
| slc2a9l2 | slc2a9 | other | upstream | 376025 | 20039787 ~ 20138213 (-) |
| hs3st1 | hs3st1 | other | upstream | 541577 | 20205339 ~ 20213629 (-) |
| spry1 | spry1 | other | upstream | 1236295 | 20900057 ~ 20905271 (-) |
| fgf2 | fgf2,LOC107717315 | other | upstream | 1350677 | 21014439 ~ 21028081 (-) |
