rpusd1 (rpusd1,LOC103399497)


Basic Information

Item Value
gene id rpusd1
gene name rpusd1,LOC103399497
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19349383 ~ 19354576 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309659.1
AGTAGCCTGTTCCTCACTACAGTGCCAAATATTCCGTTGGTTGTTAGTAAGGAATAAGAATCTTAGCGCACGTGAGGCTAAATGTGAGAATCAGGTGGCATGGAGCCGGCGAGTGTGGAGAACCTGTGTGTGTTGTACCACAGTGCTGATTACCTGGTGCTCAATAAACACTGGGACATTCGCATCGACAGCAAACTGTGGAGTGAAACGCACACGGTGCAGAAACAACTGAAGCACCGATTCCCTCAGCTCGCCGACCCTCAAACACACTACGGCTTCAGGTTCTGCCATCAGCTGGACTTTTCCACCAGCGGTGCACTGTGTGTGGCGCTGAATAAAGCAGCAGCTGGAAGAGCGTATCGCTGTTTCAAAGACAGAACAGTAACCAAGGCTTATCTTGCTctgGTTCGAGGCACTGTGGCTGATAGCAGAATGGTGCTGGACGCTGCCATTGGTAAAAACAGCACCGAGGGAAAAACCCATATGATGTGTGTGGAAGGAACAGAAGGATGTGAGAATCCCAAGCCCAGCCAAACATTATTAACTGTATTAGAATATGGATCATATGACAGAGAACCTGTTACTAAAGTTCTCCTGCAGCCTCTTACAgGACGCACCCATCAGCTCCGAGTGCACTGCAGCTCCGTCGGTCACTCCATCGTAGGCGACTTCACTTACAGCCTCGGTACAGACGACGCTCCGTATCGCATGATGCTGCACGCCTACTTCCTCCGAATCCCTCTGCAGCACGAGCTCATCGAGGTCACAACTGCCGATCCCTTCGTTTCCGAACTCGACCCCAAATGGACGCCAGAAACACGTGTTCATAATCTCGAGAGCTTATTGACTGAAATAATAACGAGAACTAAAGCAGAAGAGCGACAAAGGGAGGAGGAGAAGTTAGcgagtgaagaagaaaaagaggagaggaggaggaagagtgtGGAGGAGAGTGAGGAGGAACGAGCGCAGTGTCAGCAGTGGCTCTCGGAATGGACCCTCAGTgactaataattttatttattttttattatctcGTTTTATCTTGTCTCGTTGGCTGtgaagttaatttttttatgacaAATGAATCACCTAATCTTTCATTATTGTTCATGATGTTTACATGctactgtgttttttaaaaaaaatcaccagatgtttctatttattattgagcAGTGTTTTAACTGTAACAGAACGCGGGTCAGAGCAACACAAATAAAGACGCTAGCCAGATTCGAATCAAATCTTTTATGTGTGATGCCGAAACATTCATCcatgttttgatttatttattttttgttaggGTTGTAAACACAATGTGCTTTGTGATGATCTATACTTGTTTCatttagtctgtattaatagCTAGATAACTACTTCA

Function

symbol description
rpusd1 Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis. Orthologous to human RPUSD1 (RNA pseudouridine synthase domain containing 1).

NR:

description
PREDICTED: RNA pseudouridylate synthase domain-containing protein 1

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309659.1 True 1384 mRNA 0.45 8 19349383 19354576

Neighbor

gene id symbol gene type direction distance location
traf7 traf7,LOC107590399,LOC107719978 coding downstream 61310 19273062 ~ 19288073 (-)
crlf3 crlf3,LOC107688102,LOC107654479 coding downstream 223052 19107186 ~ 19126331 (-)
trnat-cgu_6 NA coding downstream 273043 19076269 ~ 19076340 (-)
scpep1 scpep1,LOC107654482,LOC107601266,LOC107720074 coding downstream 380602 18957049 ~ 18968781 (-)
rogdi rogdi,LOC107719995,LOC105899978,LOC107688116 coding downstream 412874 18922136 ~ 18936509 (-)
cacng3b LOC108274869,LOC103359167 coding upstream 117108 19471684 ~ 19504307 (-)
prkcbb prkcbb,LOC108260780,LOC107590404,LOC107710001,LOC107601253,LOC107689613,LOC107752983,LOC107688094 coding upstream 164303 19518879 ~ 19625616 (-)
smarce1 smarce1 coding upstream 275415 19629991 ~ 19636948 (-)
ca10b LOC108275510 coding upstream 286674 19641250 ~ 19660028 (-)
itga3a LOC108256143 coding upstream 309963 19664539 ~ 19715587 (-)
G213549 NA non-coding downstream 276398 19023758 ~ 19072985 (-)
G213407 NA non-coding downstream 500236 18792435 ~ 18849147 (-)
LOC117599003 NA non-coding downstream 1272996 18070785 ~ 18076387 (-)
G213028 NA non-coding downstream 1306104 18041404 ~ 18043279 (-)
G212891 NA non-coding downstream 1449113 17900070 ~ 17900270 (-)
G213716 tnrc6a non-coding upstream 62608 19417184 ~ 19422415 (-)
G213879 NA non-coding upstream 308761 19663337 ~ 19663762 (-)
G214159 NA non-coding upstream 665976 20020552 ~ 20056144 (-)
G214325 NA non-coding upstream 1081476 20436052 ~ 20438834 (-)
G214331 NA non-coding upstream 1090947 20445523 ~ 20445748 (-)
si:dkey-204f11.64 LOC108274053 other downstream 521649 18823471 ~ 18827734 (-)
LOC117598999 NA other downstream 972020 18375684 ~ 18377363 (-)
mettl23 mettl23 other downstream 1295167 18050735 ~ 18054216 (-)
tsen54 tsen54 other downstream 1476802 17811613 ~ 17872581 (-)
G212750 LOC100136012,LOC107575789 other downstream 1674099 17674827 ~ 17675284 (-)
rbbp6 rbbp6 other upstream 74641 19429217 ~ 19448559 (-)
lyar lyar other upstream 585778 19940354 ~ 19984149 (-)
slc2a9l2 slc2a9 other upstream 685211 20039787 ~ 20138213 (-)
hs3st1 hs3st1 other upstream 850763 20205339 ~ 20213629 (-)
spry1 spry1 other upstream 1545481 20900057 ~ 20905271 (-)

Expression


Co-expression Network