Gene
RNA
| Item | Value |
|---|---|
| gene id | G214159 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 20020552 ~ 20056144 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU253590 | True | 205 | lncRNA | 0.47 | 2 | 20020552 | 20056144 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tmem128 | tmem128 | coding | downstream | 45909 | 19968040 ~ 19974643 (-) |
| otop1 | otop1 | coding | downstream | 59384 | 19953573 ~ 19961168 (-) |
| LOC113528305 | evc | coding | downstream | 86832 | 19920704 ~ 19933720 (-) |
| cops6 | cops6 | coding | downstream | 102453 | 19913076 ~ 19918099 (-) |
| gpc2 | gpc2 | coding | downstream | 164349 | 19843001 ~ 19856203 (-) |
| wdr1 | wdr1,LOC107717326,LOC106565198 | coding | upstream | 86733 | 20142877 ~ 20158387 (-) |
| LOC113527919 | clnk | coding | upstream | 121121 | 20177265 ~ 20195513 (-) |
| rab28 | rab28,LOC102780097,LOC106600633,LOC107712918 | coding | upstream | 286329 | 20342473 ~ 20374576 (-) |
| nkx3-2 | nkx3-2 | coding | upstream | 327613 | 20383757 ~ 20386625 (-) |
| LOC117598840 | bod1l1 | coding | upstream | 338540 | 20394684 ~ 20400475 (-) |
| G213879 | NA | non-coding | downstream | 356790 | 19663337 ~ 19663762 (-) |
| G213716 | tnrc6a | non-coding | downstream | 598137 | 19417184 ~ 19422415 (-) |
| G213549 | NA | non-coding | downstream | 947567 | 19023758 ~ 19072985 (-) |
| G213407 | NA | non-coding | downstream | 1171405 | 18792435 ~ 18849147 (-) |
| LOC117599003 | NA | non-coding | downstream | 1944165 | 18070785 ~ 18076387 (-) |
| G214325 | NA | non-coding | upstream | 379908 | 20436052 ~ 20438834 (-) |
| G214331 | NA | non-coding | upstream | 389379 | 20445523 ~ 20445748 (-) |
| G214493 | NA | non-coding | upstream | 722621 | 20778765 ~ 20781702 (-) |
| G214526 | NA | non-coding | upstream | 785287 | 20841431 ~ 20841634 (-) |
| G214626 | NA | non-coding | upstream | 846954 | 20903098 ~ 20903837 (-) |
| lyar | lyar | other | downstream | 36403 | 19940354 ~ 19984149 (-) |
| rbbp6 | rbbp6 | other | downstream | 571993 | 19429217 ~ 19448559 (-) |
| si:dkey-204f11.64 | LOC108274053 | other | downstream | 1192818 | 18823471 ~ 18827734 (-) |
| LOC117598999 | NA | other | downstream | 1643189 | 18375684 ~ 18377363 (-) |
| mettl23 | mettl23 | other | downstream | 1966336 | 18050735 ~ 18054216 (-) |
| hs3st1 | hs3st1 | other | upstream | 149195 | 20205339 ~ 20213629 (-) |
| spry1 | spry1 | other | upstream | 843913 | 20900057 ~ 20905271 (-) |
| fgf2 | fgf2,LOC107717315 | other | upstream | 958295 | 21014439 ~ 21028081 (-) |
| slc16a2 | LOC108279893,LOC107596364 | other | upstream | 1180658 | 21236802 ~ 21272507 (-) |
| LOC113528016 | thegl | other | upstream | 1296137 | 21352281 ~ 21359190 (-) |
