ints10 (ints10,LOC105894096,LOC105894103)


Basic Information

Item Value
gene id ints10
gene name ints10,LOC105894096,LOC105894103
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21184962 ~ 21201869 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916809.2
ATGGGGCGTTGTGCGCATGCGCACGAGCAGTCCGGTCACTACTGCTGCTATCCAGTCTCCGTTCTGTGGTTTGTTTGATTTGTGTGTTTAGGAATAAAGGCCCAGTCCTGGAGCTGGAGCAGTAAACATGTCTGCACAGGGGGATTGTGATTTCCTGGTGAAACGCGCGCGCGAGCTCGTGCCCGAAGACCCGTGGGCTGCTAAAGCCTGGCTCATCACCGCGCGCACGCTCTATCCGGCTGACTTCAACATACAGTATGAGATGTACATGATTGAGCGCAACGCAGAGAGGACCTCTTCAGCTGGCAGACTGCTCTATGACATATTTATTAATTTCCCGGAGCAGCCGGGGGTGTGGCGTGAGATCGCTATAATCACAGCAGCATTGAGGAACGACACCCAGGACAAGAATGCACAGTTCCTCAgaggtgtgtttgaGACTCTACCAGGCCCTGTGCAGTGTCAGATGCTTCTAAAAGCCACTGAACAGTGTTTTAACACTCTGGAGAAAGCAGAGATgcacctgctgctgctgaagagGTTCCCAGACTCTGTGGTACAGCACGGGGTGAGTTTAGGAGAGTCCCTGCTGGAGGCGGAGAACATGCAGGACTTGGACACACCAGTcaactgttacaggaaactgTTTGTATGCGATGTCCTGCCGTTGATCATTAATAATATGGAGATGCGGCTTCCTGCCAGTCTGTTGCACAAGTACATGCACAAAGCGGCCGAGTTTTACATCGGCTACGTGACACGAGGCCCCAGCGCAGATGCACAGTTACAGGGACCTCAGGAAGGGGGAGGGCTTAAGTCTCCCggaaaggggcggggccagCGGGGCGTGATTGACGGCTTGACAGAGAAGTCGTCGTTGGTGGCGGAGCCGTGGGAGAGGCTGCTGGAGATTGTTGGGTCGGTGGGGCTGAGGTGTGAGTGGCAGGGGGAGAAGGGCACCAggacATACTCAGAGCTACTGCAGCGGGTGAAGGAGTTGTGCCGCTATTTGCCTGGTCTGGAGGGCGAGACTTTCTCTCGCTGCTGTGCCCAAATCGTCACCTGTTCCACACTAGTGCTCTTCCGCAGTGCGCACTTCTACATCTCCTCAGTGCAGCCCTCTCTctttcagggtcatAACTCACTAGGTTCGACTCCATGGGTTCTGGTGGAGGATCTTTCGAGTGTGTTTAACGACATTGAGCCAGAGAGACCCAGTGGAAAACATGCGCACAAAAAACGCAAACTTGCGGATGGCCGTGAGAAAACCATGAGTTCTGATGATGAGGACGCTCTGGGTAAGGGACGAGGAAGACACATTTTGGTGAATAGGACTGAAATGCCGGCTTGGGCTGAGACGTTAGAGCATTTCAGAACAGCGAGAGAGAGCTGGGAGCTCTTACACTCCCACGAGACTCTGGAatcagAGTTCAACAAGATCTGCGCAGCATGGAAGACTGAAAGCTGGCTTTGGTTCCGGATATTTCTCACCGATATGATCATATATCAGggtcaGTACAGGAAAGCTCTGTCCAGTCTAGTGCAGCTGTCCTCTCTTCAACCCCAGCAGagccagaacacacacacttcagcctcTAGCCTGGAGACACACAGAGCCTTAATCCAGCAAGCATCATGTCACTACGCACTCGGGGAGTACCGGCTGGCCTGTGAGAAGCTCTTGGAGGTTGTAAGTGGTCTGGTGCCTCAAAATCAGGAGGCAACAAAGTCCACCGAGGAGCAGAACCGAGGAAGAAACAAATCCAAGAAAGGCAGTGACTTGCGGCTTATTCCCTGCACTAGCAAAGACATTCTGCCCTTCTGTCTGCAGCTGATGCTGGCCTGCTTCAaaTTGCGAGCGTTCGCAGAGGGCAACAGAGATGACCTGTCTCTAGGTCATGTGATCGTCCTCCTGCAGCATGATTGGCCACAGGGAGAGACTCTCTTCCTGAAGGCGGTGGACAAAATTTGTGACCAGGGGAGTTTTCAGTACGAGAACTTCTTCAACTACGTCACCAACATCGACATGTTGGAAGAGTTCGCATACCTCCGTACGACGGAAGGTGGGCGGGTCCAACTGGAGTTATTGCCCAATCAGGGGATGCTAATTAAGAACCCCAGCCCCGCCCTGGGGGTGGAGTTAAATACCCTGCTGCTTCCTGGGGCTCAGAAGGCTGACAGgCATCACACTGTGACTCGTGGCATTACCAAGGGGGTGAAAGAAGATTTCCGGCTAGCGATGGAGCGCCAGGTGTCTCGCTGCGGAGAAAATCTACTCGGCGTGCTACATCGATTCTGCATTAATGAGAAAATCATCCTCATCCAGTCCTTACCCTGACCTTGGACACTTaatggaaaaatccaccctATATAACTtccatattaatctttataattatcaCAATCTTCAGCAACGcaaagctttcatgctaataccacttTCAATGCTGTTGCACTCGTCATCTCCTAGATCGCTAACTAACTGAGCAGAGTCTCTGCCGTAACTCCGCTCAACTGGGCCatgtagctgcattgcattctggaactgtCCCCACTGTATGTACATTGGATTTGTCATTAATATGACAAACCTGGTGTTTTTAGGAGCTCACAACAAAATCTAACCATTATTCTATGTAtcctatatacatatataatttgtTTCAGGGAGgaatttttcatttgaattctGCCCTATGCCCTAATTCTTGCTGAATTTGCAACATTTGTGAGAAAAACTTATTTTTCAACTTGATACTGTTTACTATTGACTTTTGTAGCCTTTGTGAATTGTCTAGGTTTAGAGTTGCCTATTTTGGATAAGTGCAGAGACCTCAAACAGGAGTGTCTTACTTTTAACGGGGTAATGGATTCTGGTATATTTCCCTGTTAAAGCTTGTGAAATTGCATATTGCAAACGTTCGACTAATTGGTTGCACTAGTTGCATCCTGTCCTATGAAGAACCTCTCAGTCTTCTTACGGTGTCTATGTCCAAGTAGTTATGTTGACAGGAAACTGCATTGCTTGGTAATGTCTGTTGTTTGGTTATCTAATAAACATGGAAATGTTACTTGATTTGGCAGTAATTGAAATCAGACTttgaaataatagaaaaaaaaattaattaataataataataataataataataataataataataataattggtaCATTTTATGTGATGTACCACTTAAATAATCTTGGACTCAGTCATATTGTATAAATGTCTTTAATTTCAAACAAGGAACaacgctttttttttctttggctaTATTTTGTAGAATTATTGTGactttgaatttgaattgtTATTCTTGCATACTTTAAATTGTTGTATACCTCATGAATTTTGAACTAAATTTGAGACTTGGAAGAAATATATAACCTGTTTTGAACTGAA
>XM_026916810.2
ATGTCTGCACAGGGGGATTGTGATTTCCTGGTGAAACGCGCGCGCGAGCTCGTGCCCGAAGACCCGTGGGCTGCTAAAGCCTGGCTCATCACCGCGCGCACGCTCTATCCGGCTGACTTCAACATACAGTATGAGATGTACATGATTGAGCGCAACGCAGAGAGGACCTCTTCAGCTGGCAGACTGCTCTATGACATATTTATTAATTTCCCGGAGCAGCCGGGGGTGTGGCGTGAGATCGCTATAATCACAGCAGCATTGAGGAACGACACCCAGGACAAGAATGCACAGTTCCTCAgaggtgtgtttgaGACTCTACCAGGCCCTGTGCAGTGTCAGATGCTTCTAAAAGCCACTGAACAGTGTTTTAACACTCTGGAGAAAGCAGAGATgcacctgctgctgctgaagagGTTCCCAGACTCTGTGGTACAGCACGGGGTGAGTTTAGGAGAGTCCCTGCTGGAGGCGGAGAACATGCAGGACTTGGACACACCAGTcaactgttacaggaaactgTTTGTATGCGATGTCCTGCCGTTGATCATTAATAATATGGAGATGCGGCTTCCTGCCAGTCTGTTGCACAAGTACATGCACAAAGCGGCCGAGTTTTACATCGGCTACGTGACACGAGGCCCCAGCGCAGATGCACAGTTACAGGGACCTCAGGAAGGGGGAGGGCTTAAGTCTCCCggaaaggggcggggccagCGGGGCGTGATTGACGGCTTGACAGAGAAGTCGTCGTTGGTGGCGGAGCCGTGGGAGAGGCTGCTGGAGATTGTTGGGTCGGTGGGGCTGAGGTGTGAGTGGCAGGGGGAGAAGGGCACCAggacATACTCAGAGCTACTGCAGCGGGTGAAGGAGTTGTGCCGCTATTTGCCTGGTCTGGAGGGCGAGACTTTCTCTCGCTGCTGTGCCCAAATCGTCACCTGTTCCACACTAGTGCTCTTCCGCAGTGCGCACTTCTACATCTCCTCAGTGCAGCCCTCTCTctttcagggtcatAACTCACTAGGTTCGACTCCATGGGTTCTGGTGGAGGATCTTTCGAGTGTGTTTAACGACATTGAGCCAGAGAGACCCAGTGGAAAACATGCGCACAAAAAACGCAAACTTGCGGATGGCCGTGAGAAAACCATGAGTTCTGATGATGAGGACGCTCTGGGTAAGGGACGAGGAAGACACATTTTGGTGAATAGGACTGAAATGCCGGCTTGGGCTGAGACGTTAGAGCATTTCAGAACAGCGAGAGAGAGCTGGGAGCTCTTACACTCCCACGAGACTCTGGAatcagAGTTCAACAAGATCTGCGCAGCATGGAAGACTGAAAGCTGGCTTTGGTTCCGGATATTTCTCACCGATATGATCATATATCAGggtcaGTACAGGAAAGCTCTGTCCAGTCTAGTGCAGCTGTCCTCTCTTCAACCCCAGCAGagccagaacacacacacttcagcctcTAGCCTGGAGACACACAGAGCCTTAATCCAGCAAGCATCATGTCACTACGCACTCGGGGAGTACCGGCTGGCCTGTGAGAAGCTCTTGGAGGTTGTAAGTGGTCTGGTGCCTCAAAATCAGGAGGCAACAAAGTCCACCGAGGAGCAGAACCGAGGAAGAAACAAATCCAAGAAAGGCAGTGACTTGCGGCTTATTCCCTGCACTAGCAAAGACATTCTGCCCTTCTGTCTGCAGCTGATGCTGGCCTGCTTCAaaTTGCGAGCGTTCGCAGAGGGCAACAGAGATGACCTGTCTCTAGGTCATGTGATCGTCCTCCTGCAGCATGATTGGCCACAGGGAGAGACTCTCTTCCTGAAGGCGGTGGACAAAATTTGTGACCAGGGGAGTTTTCAGTACGAGAACTTCTTCAACTACGTCACCAACATCGACATGTTGGAAGAGTTCGCATACCTCCGTACGACGGAAGGTGGGCGGGTCCAACTGGAGTTATTGCCCAATCAGGGGATGCTAATTAAgCATCACACTGTGACTCGTGGCATTACCAAGGGGGTGAAAGAAGATTTCCGGCTAGCGATGGAGCGCCAGGTGTCTCGCTGCGGAGAAAATCTACTCGGCGTGCTACATCGATTCTGCATTAATGAGAAAATCATCCTCATCCAGTCCTTACCCTGACCTTGGACACTTaatggaaaaatccaccctATATAACTtccatattaatctttataattatcaCAATCTTCAGCAACGcaaagctttcatgctaataccacttTCAATGCTGTTGCACTCGTCATCTCCTAGATCGCTAACTAACTGAGCAGAGTCTCTGCCGTAACTCCGCTCAACTGGGCCatgtagctgcattgcattctggaactgtCCCCACTGTATGTACATTGGATTTGTCATTAATATGACAAACCTGGTGTTTTTAGGAGCTCACAACAAAATCTAACCATTATTCTATGTAtcctatatacatatataatttgtTTCAGGGAGgaatttttcatttgaattctGCCCTATGCCCTAATTCTTGCTGAATTTGCAACATTTGTGAGAAAAACTTATTTTTCAACTTGATACTGTTTACTATTGACTTTTGTAGCCTTTGTGAATTGTCTAGGTTTAGAGTTGCCTATTTTGGATAAGTGCAGAGACCTCAAACAGGAGTGTCTTACTTTTAACGGGGTAATGGATTCTGGTATATTTCCCTGTTAAAGCTTGTGAAATTGCATATTGCAAACGTTCGACTAATTGGTTGCACTAGTTGCATCCTGTCCTATGAAGAACCTCTCAGTCTTCTTACGGTGTCTATGTCCAAGTAGTTATGTTGACAGGAAACTGCATTGCTTGGTAATGTCTGTTGTTTGGTTATCTAATAAACATGGAAATGTTACTTGATTTGGCAGTAATTGAAATCAGACTttgaaataatagaaaaaaaaattaattaataataataataataataataataataataataataataattggtaCATTTTATGTGATGTACCACTTAAATAATCTTGGACTCAGTCATATTGTATAAATGTCTTTAATTTCAAACAAGGAACaacgctttttttttctttggctaTATTTTGTAGAATTATTGTGactttgaatttgaattgtTATTCTTGCATACTTTAAATTGTTGTATACCTCATGAATTTTGAACTAAATTTGAGACTTGGAAGAAATATATAACCTGTTTTGAACTGAA
>XM_034310189.1
ATGTCTGCACAGGGGGATTGTGATTTCCTGGTGAAACGCGCGCGCGAGCTCGTGCCCGAAGACCCGTGGGCTGCTAAAGCCTGGCTCATCACCGCGCGCACGCTCTATCCGGCTGACTTCAACATACAGTATGAGATGTACATGATTGAGCGCAACGCAGAGAGGACCTCTTCAGCTGGCAGACTGCTCTATGACATATTTATTAATTTCCCGGAGCAGCCGGGGGTGTGGCGTGAGATCGCTATAATCACAGCAGCATTGAGGAACGACACCCAGGACAAGAATGCACAGTTCCTCAgaggtgtgtttgaGACTCTACCAGGCCCTGTGCAGTGTCAGATGCTTCTAAAAGCCACTGAACAGTGTTTTAACACTCTGGAGAAAGCAGAGATgcacctgctgctgctgaagagGTTCCCAGACTCTGTGGTACAGCACGGGGTGAGTTTAGGAGAGTCCCTGCTGGAGGCGGAGAACATGCAGGACTTGGACACACCAGTcaactgttacaggaaactgTTTGTATGCGATGTCCTGCCGTTGATCATTAATAATATGGAGATGCGGCTTCCTGCCAGTCTGTTGCACAAGTACATGCACAAAGCGGCCGAGTTTTACATCGGCTACGTGACACGAGGCCCCAGCGCAGATGCACAGTTACAGGGACCTCAGGAAGGGGGAGGGCTTAAGTCTCCCggaaaggggcggggccagCGGGGCGTGATTGACGGCTTGACAGAGAAGTCGTCGTTGGTGGCGGAGCCGTGGGAGAGGCTGCTGGAGATTGTTGGGTCGGTGGGGCTGAGGTGTGAGTGGCAGGGGGAGAAGGGCACCAggacATACTCAGAGCTACTGCAGCGGGTGAAGGAGTTGTGCCGCTATTTGCCTGGTCTGGAGGGCGAGACTTTCTCTCGCTGCTGTGCCCAAATCGTCACCTGTTCCACACTAGTGCTCTTCCGCAGTGCGCACTTCTACATCTCCTCAGTGCAGCCCTCTCTctttcagggtcatAACTCACTAGGTTCGACTCCATGGGTTCTGGTGGAGGATCTTTCGAGTGTGTTTAACGACATTGAGCCAGAGAGACCCAGTGGAAAACATGCGCACAAAAAACGCAAACTTGCGGATGGCCGTGAGAAAACCATGAGTTCTGATGATGAGGACGCTCTGGGTAAGGGACGAGGAAGACACATTTTGGTGAATAGGACTGAAATGCCGGCTTGGGCTGAGACGTTAGAGCATTTCAGAACAGCGAGAGAGAGCTGGGAGCTCTTACACTCCCACGAGACTCTGGAatcagAGTTCAACAAGATCTGCGCAGCATGGAAGACTGAAAGCTGGCTTTGGTTCCGGATATTTCTCACCGATATGATCATATATCAGggtcaGTACAGGAAAGCTCTGTCCAGTCTAGTGCAGCTGTCCTCTCTTCAACCCCAGCAGagccagaacacacacacttcagcctcTAGCCTGGAGACACACAGAGCCTTAATCCAGCAAGCATCATGTCACTACGCACTCGGGGAGTACCGGCTGGCCTGTGAGAAGCTCTTGGAGGTTGTAAGTGGTCTGGTGCCTCAAAATCAGGAGGCAACAAAGTCCACCGAGGAGCAGAACCGAGGAAGAAACAAATCCAAGAAAGGCAGTGACTTGCGGCTTATTCCCTGCACTAGCAAAGACATTCTGCCCTTCTGTCTGCAGCTGATGCTGGCCTGCTTCAaaTTGCGAGCGTTCGCAGAGGGCAACAGAGATGACCTGTCTCTAGGTCATGTGATCGTCCTCCTGCAGCATGATTGGCCACAGGGAGAGACTCTCTTCCTGAAGGCGGTGGACAAAATTTGTGACCAGGGGAGTTTTCAGTACGAGAACTTCTTCAACTACGTCACCAACATCGACATGTTGGAAGAGTTCGCATACCTCCGTACGACGGAAGGTGGGCGGGTCCAACTGGAGTTATTGCCCAATCAGGGGATGCTAATTAAgCATCACACTGTGACTCGTGGCATTACCAAGGGGGTGAAAGAAGATTTCCGGCTAGCGATGGAGCGCCAGGTGTCTCGCTGCGGAGAAAATCTACTCGGCGTGCTACATCGATTCTGCATTAATGAGAAAATCATCCTCATCCAGTCCTTACCCTGACCTTGGACACTTaatggaaaaatccaccctATATAACTtccatattaatctttataattatcaCAATCTTCAGCAACGTCTaagcaaagctttcatgctaataccacttTCAATGCTGTTGCACTCGTCATCTCCTAGATCGCTAACTAACTGAGCAGAGTCTCTGCCGTAACTCCGCTCAACTGGGCCatgtagctgcattgcattctggaactgtCCCCACTGTATGTACATTGGATTTGTCATTAATATGACAAACCTGGTGTTTTTAGGAGCTCACAACAAAATCTAACCATTATTCTATGTAtcctatatacatatataatttgtTTCAGGGAGgaatttttcatttgaattctGCCCTATGCCCTAATTCTTGCTGAATTTGCAACATTTGTGAGAAAAACTTATTTTTCAACTTGATACTGTTTACTATTGACTTTTGTAGCCTTTGTGAATTGTCTAGGTTTAGAGTTGCCTATTTTGGATAAGTGCAGAGACCTCAAACAGGAGTGTCTTACTTTTAACGGGGTAATGGATTCTGGTATATTTCCCTGTTAAAGCTTGTGAAATTGCATATTGCAAACGTTCGACTAATTGGTTGCACTAGTTGCATCCTGTCCTATGAAGAACCTCTCAGTCTTCTTACGGTGTCTATGTCCAAGTAGTTATGTTGACAGGAAACTGCATTGCTTGGTAATGTCTGTTGTTTGGTTATCTAATAAACATGGAAATGTTACTTGATTTGGCAGTAATTGAAATCAGACTttgaaataatagaaaaaaaaattaattaataataataataataataataataataataataataataattggtaCATTTTATGTGATGTACCACTTAAATAATCTTGGACTCAGTCATATTGTATAAATGTCTTTAATTTCAAACAAGGAACaacgctttttttttctttggctaTATTTTGTAGAATTATTGTGactttgaatttgaattgtTATTCTTGCATACTTTAAATTGTTGTATACCTCATGAATTTTGAACTAAATTTGAGACTTGGAAGAAATATATAACCTGTTTTGAACTGAA

Function

symbol description
ints10 Predicted to be involved in snRNA processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS10 (integrator complex subunit 10).

NR:

description
integrator complex subunit 10 isoform X1

GO:

id name namespace
GO:0016180 snRNA processing biological_process
GO:0032039 integrator complex cellular_component

KEGG:

id description
K13147 INTS10; integrator complex subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916809.2 True 3404 mRNA 0.47 19 21184962 21201869
XM_026916810.2 False 3208 mRNA 0.46 18 21184962 21201742
XM_034310189.1 False 3214 mRNA 0.46 18 21184962 21201742

Neighbor

gene id symbol gene type direction distance location
klb klb coding downstream 10430 21165851 ~ 21174532 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding downstream 21901 21157480 ~ 21163061 (-)
LOC113528020 LOC108274616,LOC107676766,LOC108242416,LOC103365636,LOC107660492,LOC107088227 coding downstream 29162 21147066 ~ 21155800 (-)
LOC113528290 LOC108273900 coding downstream 41099 21082019 ~ 21143863 (-)
spata5 spata5 coding downstream 181485 20904524 ~ 21003477 (-)
arl9 arl9 coding upstream 158693 21360562 ~ 21367112 (-)
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding upstream 166885 21368754 ~ 21380216 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding upstream 384229 21586098 ~ 21613875 (-)
LOC113546932 NA coding upstream 470293 21672162 ~ 21683433 (-)
LOC117598919 NA coding upstream 470953 21672822 ~ 21673330 (-)
G214626 NA non-coding downstream 281125 20903098 ~ 20903837 (-)
G214526 NA non-coding downstream 343328 20841431 ~ 20841634 (-)
G214493 NA non-coding downstream 403260 20778765 ~ 20781702 (-)
G214331 NA non-coding downstream 739214 20445523 ~ 20445748 (-)
G214325 NA non-coding downstream 746128 20436052 ~ 20438834 (-)
G214917 NA non-coding upstream 125791 21327660 ~ 21329675 (-)
G214933 NA non-coding upstream 157828 21359697 ~ 21359899 (-)
G214941 NA non-coding upstream 205001 21406870 ~ 21458183 (-)
G214947 NA non-coding upstream 217899 21419768 ~ 21468331 (-)
G214949 LOC108280967,LOC108280981,LOC108277545 non-coding upstream 233725 21435594 ~ 21505792 (-)
fgf2 fgf2,LOC107717315 other downstream 156881 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 279691 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 971333 20205339 ~ 20213629 (-)
slc2a9l2 slc2a9 other downstream 1046749 20039787 ~ 20138213 (-)
lyar lyar other downstream 1200813 19940354 ~ 19984149 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 34933 21236802 ~ 21272507 (-)
LOC113528016 thegl other upstream 150412 21352281 ~ 21359190 (-)
G215187 NA other upstream 474402 21676271 ~ 22269092 (-)
G215188 NA other upstream 483835 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 493003 21694872 ~ 21695359 (-)

Expression


Co-expression Network