srp72 (srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332)


Basic Information

Item Value
gene id srp72
gene name srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21368754 ~ 21380216 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309841.1
GGGTGGGGAAAGGGTTAGGGAGAAACCCACCGGAGGTGGTTCACGGTGGTGAAGATGGCGAGTGGTGCGGGGTCTGTAGCGTCGCTGTGGACTGAAATTAACCGCTGCGGACAAAATGGCGACTTCACAAGAGCCCTCAAGGCTGTTAATAAGAttCTTCACGAGAATAAGGACGACGTGACGGCACTGCGCTGTAAAATCGTGTGTCTCATCCAGACTGCCGGCTTCAAGGAAGCGCTCAATGTCATCAACACCCACACCAAGTCGCTCACAAGTGACATGATCGGGTTTGAGAAGGCATACTGCGAGTACCGGCTGAACCGAGTGGAGAGCGCACTGAAGACCATCGAGGGAATCTCCGAACAGACCGACAAACTCAAAGAGCTCTACGGCCAAGTGctgtacAGGCTGGAGCGATACACTGAATGTGAAGCGGTGTATAAAGACCTGATCCGAAACTCCCAAGACGAAtatgaggaggagagaaagacgAACCTCGCCGCAGTGCAGGCTGCACGGAGCACCTGGGAGAAAGCAACACCTGAGGACCTGGGCCTGGCCGAGAGCACGTATGAGCTTTGCTACAACGCAGCCTGCAGTCTGATCGGCAGAGGCCAGCTCGCTCAAGCCATGAAAAAACTCCAAGAAGCCGAAGAACTCTGTAGGCTATCTCTGGCAGAAGACTCTGACATGACAGAGGAGGATATAGACGCTGAGCTGGCAGTGATCCACTCTCAGATGGCCTACGTCATGCAGCTCCAAGGCAGGACAGAGGACGCGTTGCAGCTTTATAACCAAGTCATCAAACTGAAGCCATCTGATGTGGGTCTGCTAGCAGTCACTGCCAataacatcatcaccatcaacaaGGACCAAAATGTTTTCGACTCCAAGAAGAAGGTGAAGCTGATGAGCGCAGAGGGTGTGGAATACAAACTGGCCAAGAAGCAGCTGCAAGCCATTGAGTTTAACAAAGCGCTACTAGCAATGTATAcaaaccagGCTGATCAGTGCAGAAAGTTGTCGGCAAATCTGCAGTCACAGAACCCTGGACACCCACAGCCAGTCCTCATCCAGGTGGCTCAGCTGTGTCGAGAGAAACAGCACGGCAAGGCCATGGAGCTGCTACAGtgttTTTCAGAAAAGCATCCAGAAAGCGCATCTGGAATCAAACTGACCATGGCACAACTTTATATAACTCAAgGTCATGTGACTAAAGCCTGTGACATTCTGAGGTCGATAGAGGATTTTAAGCACAAACAAGGAATGGTTTCTGCCCTGGTGACAATGTACACACACGAGGAGGACATTGACAGTGCTATTGATGTCTTCACCCAAGCCATCCAGTATTATCAGTCGGAACAGcCCGGCTCTCCGGTACACCTCTCCCTCGTTCGTGAAGCGGCGAATTTTAAGCTCCGTTATGGCAGAAAGAAGGAATGCATCAGTGACCTGGAGCAGCTGTGGAAGCAAAACCCTAAAGACGTGCACACGCTGGCACAGCTCATCTCCGCTTACTCGCTGGTGGATCAGGACAAGGCCAAAGCGCTCAGTAAGCATCTGCCTTCTCCTGACACCATGTCCTTTAACATCGATGTGGACGAGCTGGAGAACTCTCATGGAGCCACAAATGTCAGAAAGAAAGCGGCCAAAGTCGTCGGGGAGAACCCACCCAAGGAACAGGGcCAAGTGGacattaaaaagaagaagaaaaagaagaaaggTAAACTACCCAAGAACTGTGACCCTAAATCGACCCCTGACCCCGAGCGCTGGCTGCCTATGCGAGAGCGCTCATACTACCGCGGCAGGAAGAAGGGCAAGAAGAAGGAGCAGGTGGGAAGAGGAACTCAGGGAGCGACGTCGGGTGCTGCGGCAGAACTAGAtgccagcaaaacagcaagCAGCCCCCCCACGTCTCCTCGGCCCGGCTCTGGCACCGGCTCCGCCCCCAACGTCGTGCCGCCACGGCAACAGAAACCTGCCGCTCCTGGTGCAACACGCAAAAAAGCCCcgcagaagaaaaagaagggtGGAAAAGGAGGATGGTAGACAGAAGACTGATGTCCAGAGTCGTTCCCCAGCTCCTTCCTTATGTGTCCATCTTTGGAGATTTGAAATGCTAGCTAAGGGCAGTTAGAACTCACAAAATATCCAAGGAGGGATCAGGGAATGATTTGGGATTAGACAGCTGGAGATGTGTAGAAACAGAAATCTGAcccagggaattttttttttcatgtttttaaccATCACATCCACTGATTATGAGTCAATCctttaaaatgaacaattaaGTGAAGGAAGTTTGTGATGAAATGAGTGTATGGTCTACATTTCCAGTTTTTGTTCGTGTAACCAGCAGAGGTTTCATACCTGTTATCTGAGGACCTgaccatgttgtttttttttttttttgtggcccattaaagaaacaaaaactgcCTAACCATGAACTCATTAATTCATATTTCATCACTGTTTCATTTTACAGACTTGCCTGCTAAACCTGTATGCAGAGACAGTAACTTTgtgtcaaaaacaaaaagagaggctgtttatgcaaattcaaaatatatttatttttcaaactcCTGGATAAATATCacttgtaattattattttaagaaagATGTGTCCTTCAGCCGTTTTTCCATCGTCGGGGAGGCTGAAAGTGTAAATCTAACAGGAAGAGCAGCTCCCATGTAAAATCTTAATAAAAATTTCCTTGATAACA

Function

symbol description
srp72 Predicted to enable 7S RNA binding activity. Predicted to contribute to ribosome binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in cytoplasm. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP72 (signal recognition particle 72).

NR:

description
PREDICTED: signal recognition particle subunit SRP72

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0005786 signal recognition particle, endoplasmic reticulum targeting cellular_component
GO:0008312 7S RNA binding molecular_function

KEGG:

id description
K03108 SRP72; signal recognition particle subunit SRP72

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309841.1 True 2737 mRNA 0.49 18 21368754 21380216

Neighbor

gene id symbol gene type direction distance location
arl9 arl9 coding downstream 1642 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 166885 21184962 ~ 21201869 (-)
klb klb coding downstream 194222 21165851 ~ 21174532 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding downstream 205693 21157480 ~ 21163061 (-)
LOC113528020 LOC108274616,LOC107676766,LOC108242416,LOC103365636,LOC107660492,LOC107088227 coding downstream 212954 21147066 ~ 21155800 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding upstream 205882 21586098 ~ 21613875 (-)
LOC113546932 NA coding upstream 291946 21672162 ~ 21683433 (-)
LOC117598919 NA coding upstream 292606 21672822 ~ 21673330 (-)
LOC117598868 NA coding upstream 295422 21675638 ~ 21676807 (-)
LOC117598954 NA coding upstream 303808 21684024 ~ 21684645 (-)
G214933 NA non-coding downstream 8855 21359697 ~ 21359899 (-)
G214917 NA non-coding downstream 39079 21327660 ~ 21329675 (-)
G214626 NA non-coding downstream 464917 20903098 ~ 20903837 (-)
G214526 NA non-coding downstream 527120 20841431 ~ 20841634 (-)
G214493 NA non-coding downstream 587052 20778765 ~ 20781702 (-)
G214941 NA non-coding upstream 26654 21406870 ~ 21458183 (-)
G214947 NA non-coding upstream 39552 21419768 ~ 21468331 (-)
G214949 LOC108280967,LOC108280981,LOC108277545 non-coding upstream 55378 21435594 ~ 21505792 (-)
LOC117598824 NA non-coding upstream 55437 21435653 ~ 21436927 (-)
LOC117598823 LOC108280967 non-coding upstream 56005 21436221 ~ 21556656 (-)
LOC113528016 thegl other downstream 9564 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 96247 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 340673 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 463483 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1155125 20205339 ~ 20213629 (-)
G215187 NA other upstream 296055 21676271 ~ 22269092 (-)
G215188 NA other upstream 305488 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 314656 21694872 ~ 21695359 (-)
G215182 LOC108275153 other upstream 316444 21696660 ~ 22285703 (-)
LOC117598964 NA other upstream 317527 21697743 ~ 21698174 (-)

Expression


Co-expression Network