LOC117598975


Basic Information

Item Value
gene id LOC117598975
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22321174 ~ 22321733 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579410.1
gttctctatatctctactgctcctgctggcagctgcttcctatgtgcatgcagctagagtCCCACGAGAACTAATGGTTAGACCGCAGTGCTCTCACCTCCGCAGctggggttcgattcccggccagagAGCAAAGCCCGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579410.1 True 143 ncRNA 0.57 3 22321174 22321733

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 627540 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 629598 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 636529 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 644367 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 647844 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 230991 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 308148 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 339827 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 356431 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 384821 22706554 ~ 22729853 (-)
G215228 NA non-coding downstream 123762 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 181034 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 185167 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 187809 22121456 ~ 22133365 (-)
G215171 NA non-coding downstream 238331 22025483 ~ 22082843 (-)
G215249 NA non-coding upstream 68623 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 124389 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 153288 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 156243 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 411996 22733729 ~ 22734095 (-)
LOC117598862 NA other downstream 899 22319544 ~ 22320275 (-)
LOC113546926 NA other downstream 7303 22312787 ~ 22313871 (-)
LOC117598921 NA other downstream 43705 22277026 ~ 22277469 (-)
LOC117598813 NA other downstream 45279 22275061 ~ 22275895 (-)
LOC117598948 NA other downstream 50231 22270434 ~ 22270943 (-)
LOC117598814 NA other upstream 4993 22326726 ~ 22364265 (-)
LOC117598969 NA other upstream 77952 22399685 ~ 22419910 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other upstream 334809 22656542 ~ 22704483 (-)
cltb cltb,LOC107750349,LOC107677378 other upstream 447904 22769637 ~ 22779068 (-)
G215624 LOC108277208 other upstream 813186 23134919 ~ 23156666 (-)

Expression


Co-expression Network