G1492 (gpd1l,LOC103034694,LOC108434205,LOC107600618,LOC107668285,LOC107551192)


Basic Information

Item Value
gene id G1492
gene name gpd1l,LOC103034694,LOC108434205,LOC107600618,LOC107668285,LOC107551192
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2776407 ~ 2778255 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU1831
cagaaTCAGGCAAAGAAgcttgtaatgtgaatgcagcTTTAGTTTCCCTCTCCAGCCACTAATCTCAAATCCATCATAACAGAGTCGGGAAAAAATTCTTTTGTTTGgacttttatttccattttcatttaatgtaCATTACACAGCAGCTTTAGTGAAACATGCAGTGTTTGGGACATCAGATCATAGTATCCTGACTATTTGGCAGTTCAAAGTAGTATAGTGTTTATCTAGCTGGTATATTACAGAAATATCCTTCATCAAAATGACCAGAGCTGATCTTTTAGCTTGTTTTAAAGAGCCTGCATTATAGCCATTAGACTTCAAGGGAGACAGCCTTACATGTAAGTAAAAAGATGAGAATCACTGGGGATCTTTACTGTCTAGTGCACTTATCATGAATAGTCTTTCCATGTCATTATGTCTGTCCAAATCAAGAACAAGATCTCCTGGATATAACACACTTTACCTTAATTAAAGTAATTCCACGGGCCGTCTTAGAAACACAGCCGACCATCTCGTCACACAGCTTTCGGATAAACTGGTGTGGGACCACAAACACCAGCAAGTCTGCTCCTTCTGCAGCATCCCGCAACTCAGGCACTGCAACCACATTTTCTGGAAGTTTGTACCCTGGGAGGTATTTGACATTCTCGTGTTCGGTGTTGATGATATCAGTAAGCTTCCTTCCATTTATAGTCTCCTCATACACCCACATCTTGACACTGGTGGCAAAACGCTGGAGTTTTTGTGCATTGTGGCCAATGATCCTGGCAATAGCAGAGCCCCAGTTTCCTGAGCCCACGATACACACTTTCAGTGGTGCAGTCATGGCAAATATCTTCTACCACAGAGAAGTCTAAAAATACGGCGAAAACTACTGAAGCCAAGTAACCGTCGTATAGTTACTCGATAAGAAGCCTGGGGGAGTGAACGTCGACTTTTGATTGCGTCATTAAACGTGACGACGAACAACCGCCGACGGGAGTTGTAGTTCTTTTGCATAAGTCTCATTTTGTacacaaatgtaatttaatggAGTTAGAAGTGTCTAACAGGTCAATGACTAGAACCCTAGAAAAGAGAGTTTCccataaaacatacaaaagaGTGTTTTCTAAGTAGAATTCCTATGGAAAAGACAAGaacctgtttctctctctgtacagaGAGTAAGATTCAAGAATGCCTTTATTGCCATTTACACCATAAATATTCTAGGAATTCTTACACTGTTAACAGCCAAACATATATTCTAACTATATATTAACTCACAGGTTTTCAACCCTGGTCCCAGAGGACTGTGCATTATTACAAATCTACAACAGTGACATCTTTT

Function

symbol description
gpd1l Predicted to enable NAD binding activity; glycerol-3-phosphate dehydrogenase [NAD+] activity; and protein homodimerization activity. Predicted to act upstream of or within carbohydrate metabolic process and glycerol-3-phosphate catabolic process. Predicted to be located in cytoplasm. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Brugada syndrome 2. Orthologous to human GPD1L (glycerol-3-phosphate dehydrogenase 1 like).

NR:

description
PREDICTED: glycerol-3-phosphate dehydrogenase 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1831 True 1339 lncRNA 0.54 3 2776407 2778255

Neighbor

gene id symbol gene type direction distance location
osbpl10b osbpl10,LOC108434204,LOC107713824,LOC108270254,LOC107600617,LOC107668315 coding downstream 1196 2734511 ~ 2775211 (-)
trmt11 trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854 coding downstream 337692 2424751 ~ 2438715 (-)
rspo3 rspo3 coding downstream 449868 2313109 ~ 2326539 (-)
cnih4 cnih4,LOC107703927 coding downstream 477341 2294849 ~ 2299066 (-)
preb preb coding downstream 514076 2253256 ~ 2262331 (-)
kiaa1143 kiaa1143 coding upstream 9937 2788192 ~ 2790721 (-)
zdhhc3a zdhhc3,zdhhc3a,LOC107679645,LOC107600619,LOC107666804,LOC105908916 coding upstream 17356 2795611 ~ 2804919 (-)
sybu sybu coding upstream 45134 2823389 ~ 2834898 (-)
trhra trhr coding upstream 181002 2959257 ~ 2964620 (-)
emc2 emc2,LOC107600623,LOC107666844,LOC107679651 coding upstream 227042 3005297 ~ 3036104 (-)
G1469 NA non-coding downstream 43066 2731416 ~ 2733341 (-)
G1465 NA non-coding downstream 70571 2702814 ~ 2705836 (-)
G1421 NA non-coding downstream 120108 2613257 ~ 2656299 (-)
G1425 NA non-coding downstream 136704 2590485 ~ 2639703 (-)
G1422 NA non-coding downstream 222849 2548778 ~ 2553558 (-)
G1576 NA non-coding upstream 200607 2978862 ~ 2979141 (-)
G1580 NA non-coding upstream 225540 3003795 ~ 3004003 (-)
G1583 NA non-coding upstream 269711 3047966 ~ 3048344 (-)
G1594 NA non-coding upstream 306672 3084927 ~ 3085344 (-)
G1708 NA non-coding upstream 399308 3177563 ~ 3177769 (-)
hint3 hint3 other downstream 324887 2440846 ~ 2451520 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 376150 2388648 ~ 2400257 (-)
G502 NA other downstream 2177241 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 2589560 124362 ~ 186847 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 139968 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 465580 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 879925 3658180 ~ 3659319 (-)
clec3ba clec3b other upstream 891414 3669669 ~ 3673964 (-)
G2020 NA other upstream 895991 3674246 ~ 3675836 (-)

Expression


Co-expression Network