cenpw (cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752)


Basic Information

Item Value
gene id cenpw
gene name cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2388648 ~ 2400257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU1605
CCCTTGCGTCATCATTACGCGACGAGAGTAAAGCGCGCGCCGGTTTAAACAGCGATAATTGTTGTTTTTACTTACGTTTATTTGAGCATAAACTTACAAGGTCAGTCATGTTGAAGAAAGCACCGAGAGCAGTCTTAAAATCTCACATGAAAAAGAAATCGGACATACGCATCGGAAAAAACGCAGACTTGATGGTCCAACTGAATCTGCTGCTTGTCTTACATCGACTGGCAGAAGAGTCCAGAATCAAGGCCTTTGAGGAGAAAACAGCCACTATCAAAGTCCACCACGTTAAAGCTGTTGCAAAGAAATTGTTGAAGAGCACACGAGGATGAGGTGGAACACATTGCTTCCTCTGTGAGCCTGAAGCTGCACAGAGCCCACAGTCTGAGAGAGCCCAGGTATCCAGTGCTCTCCAGACTCAACCTCTCACTGGGGCCAGGACACATGAGTCATGCCATGAGTCCACATACGCTTACCATTTGCTCATCTTTACCTTAGGACCTtcttcgtcttttttttttttttaaatttgattgttttttgtaGTCCTAAAATGTGCAACCTGCAAGATAGTGTGCAAACACTCCCTCTCAGATTAATTCCCTTTGGAGATCTGTTCACTTTTCCTCTACATTACTGTTGACCTTTTGCTTTCGAGTGGTGTTGGGAAATAGCTGTGTATAAACTTTTAGTCCGTGACTGATGGTATCGGGCCTGAATATCCGTAGCCACAAATGTTTTCCTCCTgta
>XM_026914141.2
TTGGGATTTGCCCATTGGCCACGCCCCCTTGCGTCATCATTACGCGACGAGAGTAAAGCGCGCGCCGGTTTAAACAGCGATAATTGTTGTTTTTACTTACGTTTATTTGAGCATAAACTTACAAGGTCAGTCATGTTGAAGAAAGCACCGAGAGCAGTCTTAAAATCTCACATGAAAAAGAAATCGGACATACGCATCGGAAAAAACGCAGACTTGATGGTCCAACTGAATCTGCTGCTTGTCTTACATCGACTGGCAGAAGAGTCCAGAATCAAGGCCTTTGAGGAGAAAACAGCCACTATCAAAGTCCACCACGTTAAAGCTGTTGCAAAGAAATTGTTGAAGAGCACACGAGGATGAGGTGGAACACATTGCTTCCTCTGTGAGCCTGAAGCTGCACAGAGCCCACAGTCTGAGAGAGCCCAGGTATCCAGTGCTCTCCAGACTCAACCTCTCACTGGGGCCAGGACACATGAGTCATGCCATGAGTCCACATACGCTTACCATTTGCTCATCTTTACCTTAGGACCTtcttcgtcttttttttttttttaaatttgattgttttttgtaGTCCTAAAATGTGCAACCTGCAAGATAGTGTGCAAACACTCCCTCTCAGATTAATTCCCTTTGGAGATCTGTTCACTTTTCCTCTACATTACTGTTGACCTTTTGCTTTCGAGTGGTGTTGGGAAATAGCTGTGTATAAACTTTTAGTCCGTGACTGATGGTATCGGGCCTGAATATCCGTAGCCACAAATGTTTTCCTCCTgtattttggatttttattaGTACTTAATACTTGTTAATAAACAATTTGTGCCACTTAA

Function

symbol description
cenpw Predicted to enable DNA binding activity and protein heterodimerization activity. Acts upstream of or within central nervous system development and regulation of mitotic cell cycle. Predicted to be active in kinetochore and nucleoplasm. Is expressed in digestive system; heart; kidney; nervous system; and pectoral fin bud. Orthologous to human CENPW (centromere protein W).

NR:

description
centromere protein W

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1605 False 753 lncRNA 0.44 3 2388703 2400232
XM_026914141.2 True 833 mRNA 0.43 3 2388648 2400257

Neighbor

gene id symbol gene type direction distance location
rspo3 rspo3 coding downstream 62109 2313109 ~ 2326539 (-)
cnih4 cnih4,LOC107703927 coding downstream 89582 2294849 ~ 2299066 (-)
preb preb coding downstream 126317 2253256 ~ 2262331 (-)
LOC113526881 LOC108269985 coding downstream 233470 2151756 ~ 2155178 (-)
rragca rragc,rragca,LOC108434187,LOC107700741,LOC107704952,LOC107716860,LOC106605136 coding downstream 240668 2136806 ~ 2147980 (-)
trmt11 trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854 coding upstream 24494 2424751 ~ 2438715 (-)
osbpl10b osbpl10,LOC108434204,LOC107713824,LOC108270254,LOC107600617,LOC107668315 coding upstream 334254 2734511 ~ 2775211 (-)
kiaa1143 kiaa1143 coding upstream 387935 2788192 ~ 2790721 (-)
zdhhc3a zdhhc3,zdhhc3a,LOC107679645,LOC107600619,LOC107666804,LOC105908916 coding upstream 395354 2795611 ~ 2804919 (-)
sybu sybu coding upstream 423132 2823389 ~ 2834898 (-)
G1303 NA non-coding downstream 10620 2377828 ~ 2378028 (-)
G1238 NA non-coding downstream 124074 2264375 ~ 2264574 (-)
G1236 NA non-coding downstream 136256 2250950 ~ 2252392 (-)
G1237 NA non-coding downstream 138240 2249765 ~ 2250408 (-)
G1216 tgfb2,LOC106605021,LOC106584161 non-coding downstream 223267 2163324 ~ 2165381 (-)
G1422 NA non-coding upstream 148521 2548778 ~ 2553558 (-)
G1425 NA non-coding upstream 190228 2590485 ~ 2639703 (-)
G1421 NA non-coding upstream 213000 2613257 ~ 2656299 (-)
G1465 NA non-coding upstream 302557 2702814 ~ 2705836 (-)
G1469 NA non-coding upstream 331159 2731416 ~ 2733341 (-)
G502 NA other downstream 1789482 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 2201801 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 2222579 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 2333495 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 2367365 7370 ~ 21283 (-)
hint3 hint3 other upstream 40589 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 517966 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 843578 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 1257923 3658180 ~ 3659319 (-)
clec3ba clec3b other upstream 1269412 3669669 ~ 3673964 (-)

Expression


Co-expression Network