G1303


Basic Information

Item Value
gene id G1303
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2377828 ~ 2378028 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU1609
GGAATTTGGAGGGTCATTGGAGGGTGCACCaaataaagaacagaaaagaaaggaaatgcaGGAGCAGAAAATTGCAAAATGCCAAATGGTATTGTTGAGGTAGAGAGTAGATGCATTACTCTGCAGACTCAAGTGAGATTAGCTTGGTTGTCTAAGGAATAAGGCAAGTGAGTGCAGGAATTCCAACCTGAAAGATGTGTC

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU1609 True 201 lncRNA 0.42 1 2377828 2378028

Neighbor

gene id symbol gene type direction distance location
rspo3 rspo3 coding downstream 51289 2313109 ~ 2326539 (-)
cnih4 cnih4,LOC107703927 coding downstream 78762 2294849 ~ 2299066 (-)
preb preb coding downstream 115497 2253256 ~ 2262331 (-)
LOC113526881 LOC108269985 coding downstream 222650 2151756 ~ 2155178 (-)
rragca rragc,rragca,LOC108434187,LOC107700741,LOC107704952,LOC107716860,LOC106605136 coding downstream 229848 2136806 ~ 2147980 (-)
trmt11 trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854 coding upstream 46723 2424751 ~ 2438715 (-)
osbpl10b osbpl10,LOC108434204,LOC107713824,LOC108270254,LOC107600617,LOC107668315 coding upstream 356483 2734511 ~ 2775211 (-)
kiaa1143 kiaa1143 coding upstream 410164 2788192 ~ 2790721 (-)
zdhhc3a zdhhc3,zdhhc3a,LOC107679645,LOC107600619,LOC107666804,LOC105908916 coding upstream 417583 2795611 ~ 2804919 (-)
sybu sybu coding upstream 445361 2823389 ~ 2834898 (-)
G1238 NA non-coding downstream 113254 2264375 ~ 2264574 (-)
G1236 NA non-coding downstream 125436 2250950 ~ 2252392 (-)
G1237 NA non-coding downstream 127420 2249765 ~ 2250408 (-)
G1216 tgfb2,LOC106605021,LOC106584161 non-coding downstream 212447 2163324 ~ 2165381 (-)
LOC113526561 NA non-coding downstream 248401 2112356 ~ 2129427 (-)
G1422 NA non-coding upstream 170750 2548778 ~ 2553558 (-)
G1425 NA non-coding upstream 212457 2590485 ~ 2639703 (-)
G1421 NA non-coding upstream 235229 2613257 ~ 2656299 (-)
G1465 NA non-coding upstream 324786 2702814 ~ 2705836 (-)
G1469 NA non-coding upstream 353388 2731416 ~ 2733341 (-)
G502 NA other downstream 1778662 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 2190981 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 2211759 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 2322675 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 2356545 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 10620 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 62818 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 540195 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 865807 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 1280152 3658180 ~ 3659319 (-)

Expression


Co-expression Network