LOC113526561


Basic Information

Item Value
gene id LOC113526561
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2112356 ~ 2129427 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402788.2
tgattaataataataataataataataataataataataatagttattattattattaaagtctTACTAGAGTGGTCAGCTGGGTGGCCATGCGTTATTCTAGGGTAGCACTGGCCATCCCTGGCCACCCATgagtacacactgtacatactgtGTACTAACCTTCTATCTAACTGTATTTCAGAGCAAACCAGAGGGGATTTCATTGAGTTTCAGTAGCAGATGGAAAACACTGACACAAGAAAAGTGTTGGTGAGAGTCTCTGAATGCCTTTGACAAGAGCAAAAAGCAGAACGACTCCGAAACCAAGAAACAATGAAATACAAGGTCACAACTTTTCTAGACACAATAGtttggtTACCTGCTGATTCCCACCCACACTCAGCTCTCCCCTAtgatatgacagctaccaaccagtgAAGGTGAAGATGAACACATACTTcttccaagacacgtgaagcaaGCCAACCTCATcatttgaactgctgctcatgcagtgtATCATCCTCTCAGTGAAATGCTTTCTATCGTCTTCCGCCTACATGAGTGCTGtgagtgattgacaggggagagagtactGCTattcctcccacccagagaacacagcCATTTTGCTCCCATGGCTTCTGGCCACGGATGACTGTGGCATCAACAGGATTCGAACTTGCGATTTCCCAACATATGTTACTGCCCTTAAGGCAAACATCATTAACTCTTTTAGCGAAATTATTATTTGAGTGATTATCCAGTGTATAAATATAGATGGTGTTGAATTAGCTTTGAAATGCCAACCTATTGATATTTAGCACTAGCAATTTTCATACTCAGTAGAGTAccttgtataaaaatattatctGACCAAGTTTGTGCCTTACTTTCTACATCTTTTGGTGGTAGAAGTATATTTCTGCCTATCTTAGCTTTTGCACTCCCCCCTCGCTACTTGagacaaaacaaatatttcatgTCAGATCATCCAATAAACCACAAAATAGATCATGCAATAAACTGCTAAACAGATCAGTATTTATTTTGAGGCAGATGCTTCGGGATCCTATTGCAGAAAAATATCACATGACCTTATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402788.2 True 1087 lncRNA 0.39 3 2112356 2129427

Neighbor

gene id symbol gene type direction distance location
pou3f1 pou3f1,LOC107755232,LOC103364690 coding downstream 184353 1924550 ~ 1928003 (-)
fhl3a fhl3,fhl3a,LOC107587754,LOC107716861,LOC107704953 coding downstream 231782 1850900 ~ 1880574 (-)
gnl2 gnl2,LOC107700739 coding downstream 354600 1740743 ~ 1757756 (-)
snip1 snip1 coding downstream 373991 1733410 ~ 1738365 (-)
gpn2 gpn2 coding downstream 380283 1727718 ~ 1732073 (-)
rragca rragc,rragca,LOC108434187,LOC107700741,LOC107704952,LOC107716860,LOC106605136 coding upstream 7379 2136806 ~ 2147980 (-)
LOC113526881 LOC108269985 coding upstream 22329 2151756 ~ 2155178 (-)
preb preb coding upstream 123829 2253256 ~ 2262331 (-)
cnih4 cnih4,LOC107703927 coding upstream 165422 2294849 ~ 2299066 (-)
rspo3 rspo3 coding upstream 183682 2313109 ~ 2326539 (-)
G1100 NA non-coding downstream 239656 1869646 ~ 1872700 (-)
G1089 NA non-coding downstream 262629 1849526 ~ 1849727 (-)
G1029 NA non-coding downstream 461868 1649521 ~ 1650488 (-)
LOC117599299 NA non-coding downstream 466923 1644042 ~ 1645433 (-)
G1024 NA non-coding downstream 477507 1634613 ~ 1634849 (-)
G1216 tgfb2,LOC106605021,LOC106584161 non-coding upstream 33897 2163324 ~ 2165381 (-)
G1237 NA non-coding upstream 120338 2249765 ~ 2250408 (-)
G1236 NA non-coding upstream 121523 2250950 ~ 2252392 (-)
G1238 NA non-coding upstream 134948 2264375 ~ 2264574 (-)
G1303 NA non-coding upstream 248401 2377828 ~ 2378028 (-)
G502 NA other downstream 1513190 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 1925509 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 1946287 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 2057203 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 2091073 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 259221 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 311419 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 788796 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 1114408 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 1528753 3658180 ~ 3659319 (-)

Expression


Co-expression Network