G1029


Basic Information

Item Value
gene id G1029
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1649521 ~ 1650488 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU1285
TTTTAATGGTGTAATATtgaattgcactatccattctTCACTCTTATACATTGTGACAATGAATGCGTGAAAGCTGTTAGGATTTCAATTTAGGTCATTAATGACAGAAAGAAGCCATAATGTTCTACTTTCTTCGGTTCTGGACCTCCAGGGCAGTTTCCTTCTGGTGCTCCTTCCCTAGTAATTATCTAATAGCGCAGTCAGCATCCTGTGACTGTGCCTTTAAATGTGTAGCCTATGAAAGGCCAAAGTCAGATTTGTCCCCTTTTCTCTGTGAAGCGGGCAACCAATGTGACTGCAAAGCCCACtaggaaagaaaaatgcatgCTCCTCTGTGGTGCAATCAAAGGATGAACAGCAGCCAACAGAAGGTTCAGCTGCTCAGCTTTGTGTAGTGGAGAGAGCAAGCAGTGTTACTGCATTGGAACACAGAGTAGAGAGCTAACACCGGGCATGGGCCAAGTACAAGAGCTGTCACGTAGAGACATACCCTCATGCCCTTTCAGTGACTGCCTCTCAGTCTCTAAGCTTGGAGGAGAGTGCTGATAGCCCAACAAGAGAGCACTTTGAAGGTCAGAGTGTAACCCCAGAACACAGTACACAGCATCAAGCCCTCCTTGGCAAAACTACAGCTTTATCCTCCACCTAATGCAGTGGATCAAATGCCTGACACATTTTGTGGTATATCAGCCAAAGCAAATGGCTGAGCTACTACACAGTGTACTAGTTTAATAAAGGAGCTCTTATATGCATTAGACAGTGCAGGGACCTGGTCTGTGGTCTATGGTTACAACAGCTGATTTGGAAACCAGGGGCTAAAATCAGTGGCACTAGTAGAGAGGCCATTGGCCTCACTAGTGGTATGAAGCATTGTGGTGCAAATCTCTGTAGCAAGACCTAATGGTATTAGCCTCTGTGCTAATACCAAGTGGCTTATACCACAGAGCATTGGCTATTGGTCCTCAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1285 True 968 lncRNA 0.39 1 1649521 1650488

Neighbor

gene id symbol gene type direction distance location
tcea3 tcea3,LOC108269926,LOC108443426,LOC103044436 coding downstream 17267 1620046 ~ 1632254 (-)
oprd1b oprd1,LOC108272459,LOC104938665,LOC107595906,LOC101079075,LOC101163183,LOC108249715,LOC107587885,LOC107735168,LOC107700731,LOC107756112 coding downstream 38820 1601324 ~ 1610701 (-)
stmn1b stmn1,stmn1b,LOC107700727,LOC107597104,LOC107587743,LOC103040240 coding downstream 222460 1421790 ~ 1427061 (-)
paqr7b paqr7b,LOC100305063,LOC108443418,LOC107732831,LOC107587883,LOC107700726 coding downstream 228769 1413070 ~ 1420752 (-)
si:dkey-34d22.1 LOC108269691 coding downstream 585299 1045876 ~ 1064222 (-)
tent5ba fam46b,fam46ba,LOC108443429,LOC107734389,LOC107597110,LOC107587747,LOC107700733,LOC107704962 coding upstream 2957 1653445 ~ 1659672 (-)
zdhhc18a zdhhc18,zdhhc18a,LOC108443430,LOC107734071 coding upstream 23274 1673762 ~ 1683841 (-)
pigv pigv coding upstream 35152 1685640 ~ 1688972 (-)
arid1aa arid1a coding upstream 42546 1693034 ~ 1719770 (-)
gpn2 gpn2 coding upstream 77230 1727718 ~ 1732073 (-)
LOC117599299 NA non-coding downstream 4088 1644042 ~ 1645433 (-)
G1024 NA non-coding downstream 14672 1634613 ~ 1634849 (-)
G951 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 non-coding downstream 55447 1582333 ~ 1594074 (-)
G943 NA non-coding downstream 69555 1579758 ~ 1579966 (-)
G857 pkib,LOC105417165,LOC107374466 non-coding downstream 202067 1438630 ~ 1447454 (-)
G1089 NA non-coding upstream 199038 1849526 ~ 1849727 (-)
G1100 NA non-coding upstream 219158 1869646 ~ 1872700 (-)
LOC113526561 NA non-coding upstream 461868 2112356 ~ 2129427 (-)
G1216 tgfb2,LOC106605021,LOC106584161 non-coding upstream 512836 2163324 ~ 2165381 (-)
G1237 NA non-coding upstream 599277 2249765 ~ 2250408 (-)
G502 NA other downstream 1050355 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 1462674 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 1483452 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 1594368 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 1628238 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 738160 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 790358 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 1267735 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 1593347 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 2007692 3658180 ~ 3659319 (-)

Expression


Co-expression Network