G1100


Basic Information

Item Value
gene id G1100
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1869646 ~ 1872700 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU1368
ttataatccATATAATTAcagggaaaaatgaaaaatttattaTGTTAGCTCACCAGGTAAGTGAAAagtccagtgtgctgcccagtccatGTTTTGGTTACCAGGAAACTTAAATGAAAGAATTAGTAGATAAAGTAATGTAATAACACATTTCctgctagctagcaagttaaGTGCATCAATACAGACTAAAGGGAACTGTCCAGTAAAAATCATTCCATCAATATAGTTACAGCATCTAGATGCGCCACACTGGCATAATGTTTAAACACAGTGCACTATGTTTAAACACAGAATCCTACCATctcttatttacacacacatttggtgCACAGACATGTGCCACCAAGGGGATTGCGTGTGTCTGTTTCCATAAATGTTTGTGGTATTGCCAGTAATTGAGATTATTCTGGGTAAAACAGTTTTATTGCTGTTAAACCCAAGATGGCCTGGATCAATCAGAAGGTAGTGGAGATCCCACTGCAGTGAACAGTGGCAGAGAAAGCAGGAGCCAGAGCACTGTGTCTATGAGGTAATGTCTCTCCCCCTCGCTGGCACACGCGTGGCCCTGTGTCTTAGACTGTGGGACGACAGAGGGAATTAAGGGGGGATGGGGCCATGGCAGCTTGATTTATAGGCACCTTTGAAGTGAGTTCACTCCAGCTGTAAGGCTTGCCGTTCTGTGTTTCAGAGCCTGGGACGTAGCTCCCAGAGTAccgaaatggaaaaaaagaccCCTGTGGATCAGGGCCCCCACCACAACCTGAATTCTTACTACTTGATACTAATAGATTTTCTAACGCTCACTTTTCCACGCACTACATGTACTCTTATGAACACTAGAGTAAAACGTGgcagaaggaaaagaaggaaggtGGTCCAGTTTTGATGGGTCTGCTGAGACTCATaaaagaggagaaggagagacatGTTTAAGTCCAAACCAGCAGGCAATGGCAGAGAACACCAGTTCTGCTTTTCTTGGATTAATGTTCAAACGAAACGTTTGTTTATataactgtgtttgtgtgggtatTCTGTTCAGAAGTATTTGTGCTAGTTCTCAATGATTTGAAAAGGTCTGATTTGTTTATATAGGACACTTGTATTGATGTAGTAATAGTgtacaatgatgatgatggctaAATCAAGTATATGAAAGAGCACAAGGCACATGTTATGTGCAAAAATGAGCCCTGAAGAAAGGCACTCACATCACTTtgatgaaatacatttatggtttcttaaagttgaggttTCAATTTATGCTATAAAcagaaaaacccaattttggcctttttttaaattctttttttgaCTGTTCACCAGCATCCAGCCACACCTATGTGAAAGCATTTAACAGCTGTATCAAATGTCTGATCTAATGTAGATATGTGGAGTTAGATGTGGAGTCAGTCTTGTGTAGTCAGATGTAAGCACAAAATCTATTTAAAGGTTTATGCAAGAACTGTGGCTATAATCTTTATCAGGGATCATGGAACAAGCAGGCCATCACAGGCAAATCCATACTCAGAGTAAACACAGGCAGAGTTCAAAAccataaaaaacacaaatataaactacaccaggttttaaaaaaaaaacacagtaacaaTGATCAGAATAACTGTGTCTACACGTGCAATTTTCCACAAGGATAGACTACAGAGAGGGATATAAATATTTGACACAGGTGTGACAAACTAGGCCCAGCTGTAAACAATGATCAGGGGCCAtggaggagcaggagcaggagcaggagcaggagctggagaaaacaggaagtaatcaGGAGGTGTTCATGGTGTTATTGTTCTCAGTGGAAGCTCCTCATAGGAAGACAGCATCCCTAAGACTGATTTATAAGAAAAACCATGTGCTGAATACCATAGCTCATTCAGCCATTTGGAAAAGGGGGTGGTATtgatttaatacaatttttattgaaatttattATGCATTCCTCTGCATAATAGTCATTGCTCCAGGAAAGTGTGTGCTGAAAACTGTTTGGGATGAAGTTAATAGTTCAAATGAAGTTGGTTGACATGGAGTCAGAGTGCTGTGTGTATTTCCTGCAAGACTCAGCAGAAAGCCATCGCTAAGAGACATAAACAAAGGGTCTAGTGGAGGGGTGCAAGCAGCTGTTGTAGTGACGGCTCTTCCTGAACAACTCCTTCATTGTCTTCTAGATCTGCTGCTGCCGCcactgtttgttttggtttcttttaACCAAATAATGAGCATGTCTGTCTTTCCTCTCTGAGTCTGTCTGTGCATATTTTAGTGCTAAATATTCGAGATAGGCTGCTCATCTGTCAGTGTCTGAATTTGTTTGTCAGATGGTGTGAGATGTCTCTGGTGTTGGGTCATACAGGAAgtagcagagtgtgtgttttcacaaaTCAGGTCAGCTGATGTCGGGTTATTGGGTTTTATAAATGTCAAGCAGAGGTTAGTTAGTAGTCAAACCCCTTAAATCCCTGGCTTATTTACTCAGTTGTTCaccttaaagcatattatttactAACTACTTTAAATTACTCATAATGTACCATGAAATTAGTAGGACAAAATATGCCtgtcttatttatttgtatgaGCACAGACTCCTGTTTCTGCTTGTTTTAGTTTGTTGCCATCTTTAACTGCAGGCTGCTCTACATGTAGAtgaaaagcacttctgtaagttgctccaGATATGAGAATCTGCTAAATTTTGCGTATGTAAATAGTTATAGTGAGGAACATGAGTCTAAAAGAATATTGGTTCTTATTAACAGTGGCTCCTTAATGTTATCACGGTGTCATCGCATATTGCTAGGAACTTTGCCAGCTGACTTCTAAATATATCcttgatttacaaatgtacAGGAAGATACAGACTGAGTTATTACCTGTTGCTATAATGTTAccttaagttttatttataggtTCATGCTTTAACTGTctattacaattttccttttaaattcAGCTGAAAactttatgcattttaaatgaCATGACATCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1368 True 3015 lncRNA 0.36 2 1869646 1872700

Neighbor

gene id symbol gene type direction distance location
gnl2 gnl2,LOC107700739 coding downstream 111890 1740743 ~ 1757756 (-)
snip1 snip1 coding downstream 131281 1733410 ~ 1738365 (-)
gpn2 gpn2 coding downstream 137573 1727718 ~ 1732073 (-)
arid1aa arid1a coding downstream 149876 1693034 ~ 1719770 (-)
pigv pigv coding downstream 180674 1685640 ~ 1688972 (-)
pou3f1 pou3f1,LOC107755232,LOC103364690 coding upstream 51850 1924550 ~ 1928003 (-)
rragca rragc,rragca,LOC108434187,LOC107700741,LOC107704952,LOC107716860,LOC106605136 coding upstream 264106 2136806 ~ 2147980 (-)
LOC113526881 LOC108269985 coding upstream 279056 2151756 ~ 2155178 (-)
preb preb coding upstream 380556 2253256 ~ 2262331 (-)
cnih4 cnih4,LOC107703927 coding upstream 422149 2294849 ~ 2299066 (-)
G1089 NA non-coding downstream 19919 1849526 ~ 1849727 (-)
G1029 NA non-coding downstream 219158 1649521 ~ 1650488 (-)
LOC117599299 NA non-coding downstream 224213 1644042 ~ 1645433 (-)
G1024 NA non-coding downstream 234797 1634613 ~ 1634849 (-)
G951 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 non-coding downstream 275572 1582333 ~ 1594074 (-)
LOC113526561 NA non-coding upstream 239656 2112356 ~ 2129427 (-)
G1216 tgfb2,LOC106605021,LOC106584161 non-coding upstream 290624 2163324 ~ 2165381 (-)
G1237 NA non-coding upstream 377065 2249765 ~ 2250408 (-)
G1236 NA non-coding upstream 378250 2250950 ~ 2252392 (-)
G1238 NA non-coding upstream 391675 2264375 ~ 2264574 (-)
G502 NA other downstream 1270480 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 1682799 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 1703577 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 1814493 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 1848363 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 515948 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 568146 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 1045523 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 1371135 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 1785480 3658180 ~ 3659319 (-)

Expression


Co-expression Network