rragca (rragc,rragca,LOC108434187,LOC107700741,LOC107704952,LOC107716860,LOC106605136)


Basic Information

Item Value
gene id rragca
gene name rragc,rragca,LOC108434187,LOC107700741,LOC107704952,LOC107716860,LOC106605136
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2136806 ~ 2147980 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913723.2
aaatgcacagggTGTGATCACATAGGCTGAAAGTATTTTAAGTTTTTCAGATACGTTTTCAACTGTGTTGAGATGACATACAGATGTTTCATTTAATAACTTCTAAACATTAcgaaacatttttttgtgtttttgccgCATTTGATCGCCTTTCAGTTATACGTCTAAGGTTTCCCCACCCGGAAACTGAATAATACAAGGTAGGCTTCTTGAACGCTGCATTTCCGCGTGCACGCCAGTGCAGTCAGGTGACTGTCAAGCACATGACTCTAACGGATCTCCCCGCATCCTCGGCCTCCTTTGAAGACTGACAGCTGGCTCACCCAATGATAGCGCACCTAGCCAGCCAGTTGTCCAATAAGCAAGCAGGGGGCGGGACTAAAGTAAAGCTTTTGCTACAGAGAAACATTGGGGAAGACGAATGTGTCTGAACGACTTTGTTCTCTATTAATAGACAGGGAGGCATTTTGTGCTTGTTCATGCtacagtgtatgtgtgctaGATGTACGACAGCTGTGTGTTAAAGCACATGAGTGTAGAGTAAAGGGGTGGGGGATTTTTCGGGGAGAAAGCGTCGTTTGGGTCAAGATGTCGATTCAGTACGGAGAAGCGCTGGCAGATAGCTACGGGGTGGCCGACTCGTTCCCCAAAGATTTCGGCTATGGAGAAGAGGAGACAGACATGGAGGACAGTCCAGCACCGTCCGACAGCAAGCCGAGAATACTGCTGATGGGCTTGAGAAGGAGTGGGAAGTCCTCCATTCAGAAGGTTGTGTTTCATAAGATGTCCCCCAATGAGACCCTGTTTCTGGAGAGCACTAATAAAATCTACAAGGACGACATCTCCAGCAGCTCTTTTGTCAACTTTCAGATCTGGGACTTTCCTGGTCAGGTAGACTTTTTTGACCCGACCTTTGATTACGAGATGATCTTCAGAGGAACCGGCGCGTTGATATTTGTCATTGATGCACAGGATGACTACGTGGAGGCTCTTGGCAGACTCCACTTAACGGTATCTCGGGCCTATCGCGTCAACCCTGAAATCAACTTTGAAGTGTTCATCCATAAAGTTGACGGGCTATCTGACGACCACAAAATTGAGACACAGAGGGATATTCACCAGAGGGCTAATGATGACCTGGCTGATGCCAGCTTGGAGAAACTGCATCTTAGCTTCTATTTGACGAGTATCTATGACCACTCTATATTTGAGGCGTTCAGTAAAGTGGTTCAGAAGCTCATCCCCCAGCTGCCCACCCTGGAGAACCTtctcaacatttttatttctAATTCAGGGATTGAAAAGGCTTTCCTGTTTGACGTGGTTAGTAAGATCTACATAGCCACAGACAGTTCACCGGTGGACATGCAGTCCTATGAGCTGTGCTGCGACATGATTGACGTGGTCATTGACGTGTCGTGCATCTATGGATTAAAGGAAGATGGCAGTGGCAGTGCGTATGACAAGGAGTCAATGGCAATCATTAAACTCAATAACACCACCGTCCTCTACCTGAAAGAAGTCACCAAGTTTCTTGCCCTTGTCTGTATTCTTAGAGAAGAGAGCTTCGAGCGCAAAGGCTTAATAGACTACAACTTCCACTGTTTCCGGAAAGCGATTCATGAAGTGTTTGAGGTTGGTCTGTCCACACCGAGGATGGGAGGCCAGGCAGCTGGAACGCCCTGCATGATGAAGACGGTGGCAATGAATGGCACCCCCAGGAGCACCGTGTAGAGAATGCATAGatgagaggaggaaaagaatagagaggaagagggagtcagtagaaaaagacagaaagacaataAATGGGAGGCGCACTGCCATGCCAACCATTCTGCCTGCTCCCAAATGCCTTATACACAGAGCAAAGGACTCTGAAGCCtctgaaagaaaacacagagcAATGGGGTGGACGTTTGCAGCATAACGGGGTAAGCAATAGGACAGAAGGAAAGATGCACAAAGAGATAGCCCTTTTTGTGTAATTAAATGGCATtaaaaaactggtttaaaagAATAATACTAGACCGCAATCAAGTGATAAGAAATGCAAGCCGAGGGGACCGCAGTTGTGGCCCTCTCTGCACAAagccttcacacacactgaccgcTACCTGAGCAGCAGAAGCTGAATGAACCCTGTTCTGTTCTACAACTGGCCTCATGAGCTGATTCTACAAAGCGTCTTGTTTAACCCAATGGCAGAAAATGTGATGGTACTTGCTATTGGGCACCGATTAGAGAGCCCGGCTGGCTGTGTACACAACAATGCTTGTGAAGCCTTATATAGAGGAGACTTGCCTGATGCAAGTACCTGCTTACAACATTTACCTAATCCTATTTCCTAAGCTGTTgcttttttaaaggttttccAGGGAGTGTGAAAAGGGATTAAAGTGCATTGTGTagcctgtttgtgtgtgaagaaggaggtgtgcgcgcgcgcgtgtgtgtatttatgtatgtgcGTTCCTTTCCTGTCTGCTGAGGCTCACAGAGATCTTGTGACCTCACACACAGGGCTGCACAGTTGTAACAAAacaataattgtattttttttttttttaaattaataattaattgaaaTAAACAGTTATTATTGTCTCCAGCGAAACCCTGATGCTTTGTTAGAGAAAAATGATGGAACATTTACAGAGCACTCATTAAATGCACAGTGCTGTTCATAAATACAAGGATTTAGTAGTCAGCTGCATTATAATCAAAGTGGAATCACTGTCTTCTGCGTCGAAATGACTAGAGTCCAAAGCTGTTATTTTTGCTATGAAGCGGTTTAGCTGTGCAGCCCTCATCTCTCGCTCGGAATGTTGCGAAACAGGGAAATAATTGTACAGTTAAGCGGTAGGACACTGTGATTGCACTCACTTTTGTTTAGTTGCTTGGTCTCAGAGACTCCGCACATCTCTGCACACGGTGGTTCGAGTCAGAAGGAACATTTGAATGAACTACATTCCGGTTGTGTGGTGCCAGTATCTTCTATCACTGACATATTCACTTTCACTCTTTTCACAGAAATACCAGTAGTTTATTtggcataaaaataaatcacaagaCCTCCACACTGTAGCCGATACTATATCACTCTCATTCCAAGCATGTCTACTGAATCCATATAACACTTTTTGTTGAGTTGTAAAGGGATGCGCACTAACCCGatataaacaaaatcaaagaAGGAGCAACCAAATATCTCATTCTAACCTTACTAGAGTATTTCACTAGACCTCTTGTGATTCTTGCTTTTCATCTGAGATTATATCTGGCTTATGTTCTGCTAGAAATGTTACCATtcacaagaaataaaacatgcactGAAGTCATGCTGGTTGGTGTACTGTAGCTGCCTTTCACATCAGAAATATTGGTCAGTTTGTACAGACCACAGACTGCTATAGACACAGACGCTCACTTCCAAACCCATGCATTTTTATCACCAAGCCTCTTCGTGACAGTCGTATCATGTCCTCTAGAGTGTTAGTTGAAGAGTGGCCATGGGGTCCATGAAGCAAAACCAGGTggtcagtgatttttattttttatttagtcacagcagtggaaatcacaacccaccattatcaaaactACTGCTTATTGAGTTCTATAATTATTAGCCTGTTTAACTAGTCACTTGATTTGAATGGCTTTAAACCAAACTCAGAAACAAGTAGGCTATAAATATCAACTTGTACTTattgtgttctgtcagtggaaaagtTCTCTCATAATGAAGCTCTGATAAATAATAGACAAATTACtgtacaattttaaataatgtttaaataaacatgtacatgagga

Function

symbol description
rragca Predicted to enable GTPase activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; cellular response to starvation; and positive regulation of TOR signaling. Predicted to be located in cytoplasm. Predicted to be part of Gtr1-Gtr2 GTPase complex. Predicted to be active in lysosome and nucleus. Orthologous to human RRAGC (Ras related GTP binding C).
rragc Enables several functions, including GTPase binding activity; guanyl ribonucleotide binding activity; and protein heterodimerization activity. Involved in cellular response to amino acid starvation; regulation of TORC1 signaling; and response to amino acid. Located in lysosome and nucleoplasm.

NR:

description
PREDICTED: ras-related GTP-binding protein C

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K16186 RRAGC_D; Ras-related GTP-binding protein C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913723.2 True 3819 mRNA 0.43 7 2136806 2147980

Neighbor

gene id symbol gene type direction distance location
pou3f1 pou3f1,LOC107755232,LOC103364690 coding downstream 208803 1924550 ~ 1928003 (-)
fhl3a fhl3,fhl3a,LOC107587754,LOC107716861,LOC107704953 coding downstream 256232 1850900 ~ 1880574 (-)
gnl2 gnl2,LOC107700739 coding downstream 379050 1740743 ~ 1757756 (-)
snip1 snip1 coding downstream 398441 1733410 ~ 1738365 (-)
gpn2 gpn2 coding downstream 404733 1727718 ~ 1732073 (-)
LOC113526881 LOC108269985 coding upstream 3776 2151756 ~ 2155178 (-)
preb preb coding upstream 105276 2253256 ~ 2262331 (-)
cnih4 cnih4,LOC107703927 coding upstream 146869 2294849 ~ 2299066 (-)
rspo3 rspo3 coding upstream 165129 2313109 ~ 2326539 (-)
trmt11 trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854 coding upstream 276771 2424751 ~ 2438715 (-)
LOC113526561 NA non-coding downstream 7379 2112356 ~ 2129427 (-)
G1100 NA non-coding downstream 264106 1869646 ~ 1872700 (-)
G1089 NA non-coding downstream 287079 1849526 ~ 1849727 (-)
G1029 NA non-coding downstream 486318 1649521 ~ 1650488 (-)
LOC117599299 NA non-coding downstream 491373 1644042 ~ 1645433 (-)
G1216 tgfb2,LOC106605021,LOC106584161 non-coding upstream 15344 2163324 ~ 2165381 (-)
G1237 NA non-coding upstream 101785 2249765 ~ 2250408 (-)
G1236 NA non-coding upstream 102970 2250950 ~ 2252392 (-)
G1238 NA non-coding upstream 116395 2264375 ~ 2264574 (-)
G1303 NA non-coding upstream 229848 2377828 ~ 2378028 (-)
G502 NA other downstream 1537640 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 1949959 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 1970737 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 2081653 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 2115523 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 240668 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 292866 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 770243 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 1095855 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 1510200 3658180 ~ 3659319 (-)

Expression


Co-expression Network