fhl3a (fhl3,fhl3a,LOC107587754,LOC107716861,LOC107704953)


Basic Information

Item Value
gene id fhl3a
gene name fhl3,fhl3a,LOC107587754,LOC107716861,LOC107704953
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1850900 ~ 1880574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914145.2
AGTTGAATCAGGGCGGGAACTTGTGACTCACTGACTTCCTCAGTCGGTTTATAGTAGCGCGTGCAGCTGAAGAGCGCTGGAAGCGTCTGCGTTATGGCTGAGGGAAAAGCCTGAGCTTCCTCCCAGCACCCCGCGCGAGCAGCACTGGACTCCTACCACACCGTTCGCTTCATCAGAGCTGCCTGAGTGGAGTCGGCTCATCGGGCTCGTCTTCTCCTTCCActgcttttctcttctttttccagAGACTGACATTGACCAGGGAAACATGAGTGAGCGATTTGATTGCGACAACTGCAAAGAATCCCTGTACGGAAGGAAATACATCCAGGCAGAGGAGAATCCATACTGCATCCCCTGCTACGACAGCCTGTTTGCCAACACCTGCGATGAGTGCAAGGAGCTGATAGGCCATGACGCAAGGGAGCTGTTCTATGAAGATAGGCACTACCATGAGCACTGCTTCCGCTGTTTCCGCTGTGACCGCTCATTGGCTGATGAGCCCTTCACCAGCCAGGATGATGCTTTGCTCTGCAACGACTGTTACTGCAACGAATTCTCTTCCAAATGTGTCGCTTGTGACAAGACTGTCATGCCTGgTACTAGGAAGCTGGAGTATGCCGGCAACACATGGCACGAGGGTTGTTTCATTTGCAGCAGCTGTAAGCAGCCTATTGGCTCCAAGTCCTTTATCCCAGATAAGGATGATCACTACTGTGTTCCTTGCTATGAAAACAAGTTTGCCCCTCGCTGCACTCGATGCAAACAGGTCTTGGCCAAAGGGGGTGTGACCTACCGCGATGAGCCGTGGCATAAGGAGTGCTTTTTGTGTGCAGGCTGTAAAGTGCAGCTAGCTGGCCAGCACTTCACCTCCCGAGACGACCGCCCCTACTGTCTTAAGTGTTTTGGAAACCTCTATGCTAAGAAGTGTGAGGCCTGTAGCAAACCAATCACAGgtTTTGGTGGAGGGAAGTACATTTCATTCGAGGAGCGGCAATGGCACCAGTCTTGCTTCACCTGCACCCGGTGTTCTGTGTCACTTGTAGGAGCTGGTTTCTTTCCTGAGAGGGATGAGATCCTGTGCCGTGAATGCAACAGCAATCTATAGAGCCTCTCTCCATTTtaccaatcacacacacacacacacacgtgtacgtACATGCATGTCTCCATGCTTACAGACTCACAGAGTCCATGGAGTTTTcacaaatactgaaatactgattGGCTCAGCAAAAGCTGTGGTGATTACAATATCCTCATTTGATATTCAGTCAGGGTGGttttcttaaacacacacaaaacattttggCAGATAAGGTGTAAGTCAAAGATAAGTTTGTTTGTCTAAGAATTTCCTTGTTTGCCAAAGAGGTACAATGCAAGATCATACTTGTTAGAAATCAGTCTTAGAATTGTGCCTTACTAGTTAGCATTGCTTACCCCTTGTGCTTTCACTTTATGTAACTTTATGCCATCATTGTAGGTCTTTTTAACCTCAAAGCAGAGAACACAGTCTCATCTCAGAGTGCTACGTGTCTCACTCTGCATTCATCAAACTGCAGATTCCTTAGCTGCACTGCTTACTTTGTTGGGATGGAAAGCAGTCCATCATTTTTTCCATTCAGCAACAGTAGTGCTTAAGCAATGCTTTAGATAAACCACCAGAGCTCTCTCATCCTAGGACTACAAACAAGGGATGTAGTAATTATTATAGAGACATAATCCATCCATTCTTTATTTGTCCTGGTTCAGTAGAACTACTCTCTGACCATTAAGAGAGAGTTAATAATGAGTAGTTAGAGTATATGATTACAACCTATAAAACACCTCAGACCAATTCCTCCATAAACATCGAAGTGCTCTGTGGCCAGATACGTTCATTTCCCAAAAAAGACTTAATTTTGTTGTATTGGACAAAATTATTGGCCAGGAGAACACATATTTGGCAAGACATTGTATCTGAAAGTTATGATCCAAGGCTGGTTAAGTTGATAAAATGTTGGTGTGACTAATTTGAGGTTTGTAGTATTTAAGCACTTTTGATGTGTTTCTTCATCGGTTTTGTTCCTGAGCATATTGTATGTCAAAATGCATTAATGGGTTGTtccaaataaatgtatgtatgtatgtatgtatgtatatcacACCAAAAAGTAACTCTTacagaaaaagtgtgatgtgttttacagaaaacattcatGCATTTGCACTAACGCTTGAATTAAGCATATCTTGTGCacagactaataataaatgaaaagacaCCGCATGCATACACTGCATTTAAACTGAATACAAACCACTGTTTGCTATTTCTCAATTCTTTGTGTAATTTTTGGCCTACTATACACATGCGCAATActtccttgtttttctttcatcttttgtatactatgtgatttttttttatacttctgTTAGGCTCACATTTGTTGAGAGTAAATGACTGGGCAAGTCCCATGAAAATGTATGTTGCAATATGAATATGTCAGCAGAATGGTATGCATGTTGTtctcatgattttttaaaaaatttcctTTCCAGTCTTTATCGTTTATTGCTTTGTTACTGAAGATAATATTACTAATTTCAccataaaatatttctaaatgtatGTATTCACTTTGAGCTTTGATGCTGGCTAGTCAGAGTTAGCTAATgctttttcattgtttatagAAATATGTAATACAGACATTTAGATTGGAAAAGTGGTTTAAAAAAGATTCCGTCTGATCTAAGTGTTGAtgttatttgttaataaatattttataaattaatccAATTTTGGTATCATTTTCTCTGTGAAAATATTAGCAGAAAGAGTCCTTATCAAATTCTGATCAAATCTGTAACACAGTGGGTTTATTTGATTTGAGAGAATTTAATGacattgtaaataaattctgTAGCTTTAAAGGTGA

Function

symbol description
fhl3a Predicted to enable actin binding activity and transcription coregulator activity. Predicted to be involved in actin cytoskeleton organization. Predicted to be active in Z disc; nucleus; and stress fiber. Orthologous to human FHL3 (four and a half LIM domains 3).
fhl3 Predicted to enable actin binding activity and transcription coregulator activity. Predicted to be involved in actin cytoskeleton organization. Located in focal adhesion.

NR:

description
PREDICTED: four and a half LIM domains protein 3

GO: NA

KEGG:

id description
K24414 FHL3; four and a half LIM domains protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914145.2 True 2927 mRNA 0.41 6 1850900 1880574

Neighbor

gene id symbol gene type direction distance location
gnl2 gnl2,LOC107700739 coding downstream 93144 1740743 ~ 1757756 (-)
snip1 snip1 coding downstream 112535 1733410 ~ 1738365 (-)
gpn2 gpn2 coding downstream 118827 1727718 ~ 1732073 (-)
arid1aa arid1a coding downstream 131130 1693034 ~ 1719770 (-)
pigv pigv coding downstream 161928 1685640 ~ 1688972 (-)
pou3f1 pou3f1,LOC107755232,LOC103364690 coding upstream 43976 1924550 ~ 1928003 (-)
rragca rragc,rragca,LOC108434187,LOC107700741,LOC107704952,LOC107716860,LOC106605136 coding upstream 256232 2136806 ~ 2147980 (-)
LOC113526881 LOC108269985 coding upstream 271182 2151756 ~ 2155178 (-)
preb preb coding upstream 372682 2253256 ~ 2262331 (-)
cnih4 cnih4,LOC107703927 coding upstream 414275 2294849 ~ 2299066 (-)
G1089 NA non-coding downstream 1173 1849526 ~ 1849727 (-)
G1029 NA non-coding downstream 200412 1649521 ~ 1650488 (-)
LOC117599299 NA non-coding downstream 205467 1644042 ~ 1645433 (-)
G1024 NA non-coding downstream 216051 1634613 ~ 1634849 (-)
G951 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 non-coding downstream 256826 1582333 ~ 1594074 (-)
LOC113526561 NA non-coding upstream 231782 2112356 ~ 2129427 (-)
G1216 tgfb2,LOC106605021,LOC106584161 non-coding upstream 282750 2163324 ~ 2165381 (-)
G1237 NA non-coding upstream 369191 2249765 ~ 2250408 (-)
G1236 NA non-coding upstream 370376 2250950 ~ 2252392 (-)
G1238 NA non-coding upstream 383801 2264375 ~ 2264574 (-)
G502 NA other downstream 1251734 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 1664053 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 1684831 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 1795747 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 1829617 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 508074 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 560272 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 1037649 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 1363261 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 1777606 3658180 ~ 3659319 (-)

Expression


Co-expression Network