gnl2 (gnl2,LOC107700739)


Basic Information

Item Value
gene id gnl2
gene name gnl2,LOC107700739
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1740743 ~ 1757756 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913668.2
ATGACGAAACCAAAATTCAAGGGAAAAAGCTCTATAAATCCGTCCAGTTCCAGCAGTAATCCGGATCGTGTTAAGGGCTCCGGAGGGAACACTATGAGGGACCGTGCCACTATCAAGCGTCTGAATATGTACAGACAGAAGCAGAGATGTAACAGTCGGGGTAAGGTCATCAAGCCTTTGCAGTTCCAGTCCACTGTGGCACCTGGGACTGTGGCTAGAGTTGAGCCCAACATCAAGTGGTTTGCCAATACTCGGGTCATCAAGCAGTCATCACTGCAGAAGTTTCAGGAGGAGATGGACGCAGTGAAGAAAGATCCATACAGAGTGGTGATGCGCCAAAGCAAGCTTCCCATGTCCCTTCTGCATGACCGAGTCAAAGCACATAACTCCAAGGTTCACATTCTGGACACAGAGACTTTTGAGACCACATTTGGGCCTAAGGCTCAAAGAAAGAGGCCTAATCTGAAAGTGGGAGAGCTGAAAGAGCTGGCAGAACAGGCTGAGGCTTCGGCTCAGGGTTACACTGCAGAGAAGGACCGCGACCTGGTGACTGAGGACACTGGGGTCAGGGATGAGGCTCGTGAGGAAATTTTCAAGAAGGGCCAGTCAAAGAGAATCTGGGGCGAACTTTATAAGGTGATCGACTCTTCAGATGTTGTCATCCAGGTGCTGGATGCTCGGGACCCCATGGGCACGCGATCCCAGAACATTGAGACCtacatgaagaaagagaaacCCTGGAAACACCTCATCTTTGTGCTCAACAAGTGTGACCTTGTTCCCACCTGGGTGACGaaacGCTGGGTCGCAGTGCTGTCTCAGGAATACCCCACGTTGGCCTTTCACGCCAGCCTTACCAACTCCTTCGGGAAAGGCTCTCTTATTCAGCTCCTCCGTCAGTTTGGAAAGCTCCACGCAGACAAGAAGCAGATCAGTGTGGGTTTCATTGGTTATCCCAATGTAGGGAAGAGCTCAGTAATCAACACACTTCGTTCCAAAAAGGTCTGCAATGTGGCACCTATTGCTGGTGAGACCAAGgtatgGCAGTACATCACACTAATGAGACGCATTTTCCTGATTGACTGCCCCGGAGTTGTGTACCCCTCTGAGGACAGTGAGAGTGACATTGTGCTGAAGGGAGTGGTCCAGGTGGAGAAGATCCGTAACCCAGAGGATCACATCGGCGCCGTTCTGGAGAGAGCAAAAGCCGAATACATACAGAAAACCTATCACATCCCATCCTGGAGCTCTGCTGAGGATTTCTTAGAAAAACTGGCCTTTCGCACGGGAAAACTGCTCAAGGGAGGAGAACCTGATATGTCCACTGTCTCTAAAATGGTGCTCAATGACTGGCAGAGGGGACGCATCCCATTTTTCGTCAAACCGCCTGGACCTGAGACAGATGAGGAGGCTAAAGCACAGCTGTCAGTGGAGGTGAGTGCAGTGGATGCAGTTTATGAAGACGAACCAGAGCAACAGCACACCGAGATGACTGAATCCACTGAGCTTGATGCCGGGCTGcagcagagacagaaacaagaACATGTGCAAAGGATCATTGCTGGTGTCAAGCAGAACTTCGGCAAAATTAATGTAGCTCCCGAGTTCAGCGAGGAAGATCTTGTACCAGTGGAGATGCCTGATCTGCCAGACTCCTGTGGAtcagaggaggatgaagaggaggcaagtgaggaggaggaggaggaggatatggaggaaaatgaaaatgcagaagAGGAGAgtggagaagaagaggaaggaaaaaaagtaCATGTTGCTGGCCATTCTGACAGAGCAGTGGCCAAGAGTACACGTGAGGTGAACAAAGAGTTGGATGAGAAGATAGCCAAATTGAAGCATTTCCTGGACAGCGCCAAGTCCAAACGTTTCTCCACCATTAGAATTCCTAAGGGCCTTTCGGAGAAGGTTTTTGTTTCAggtgaaacaaaaacagaacagaagaacataaagaagcCACAGCCGAAAGCTGCGGTACATGTCAGCAGGAAGAGAAAGGCTCTCGACATGGAGGAGTCGGTGCAGCAGAATAAGCTCACGTCTAAGGAGAAAAGAAGGCTTGACCGCGCACAGAAGATAAAGAAAGTTGGCGTCCGCTATTATGACACACACAACGTtaagaacaaaaataagaacAGAAAAATACCCGCTGAGGGCAATAAAGGCAAAAGAGCTAAGCGATAAAACAATTTGCTTGGTCACAGCTGTATTTCCGTGGACTTGTCTGGTTGGGGAAAGCAGATGTGAGATATGGAGATGTACATGCATGAGGAGCATTTACTGTGAGGATCTGGAATTGAATCAGAACTTCTCAAATGCACTTTATTCAATGCAACATCCATCCACATAACAAACCCCAGAACTCTGAATGACtcactgtttttaatttaatcatatcCTTGTTCTACAGTTCTGAAAATCTCGATCACAGGAGAACTCATCAATAAAGTGGACATGACAAAACAATGTTATATTGAAATATGAAATCAGTTGAAGTCaggttttattttgaaataaactgAAGCATGACATCTTTA

Function

symbol description
gnl2 Predicted to enable GTP binding activity. Acts upstream of or within several processes, including cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); neural retina development; and regulation of exit from mitosis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including head; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human GNL2 (G protein nucleolar 2).

NR:

description
nucleolar GTP-binding protein 2-like

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0007096 regulation of exit from mitosis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005730 nucleolus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14537 NUG2, GNL2; nuclear GTP-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913668.2 True 2555 mRNA 0.48 16 1740743 1757756

Neighbor

gene id symbol gene type direction distance location
snip1 snip1 coding downstream 2378 1733410 ~ 1738365 (-)
gpn2 gpn2 coding downstream 8670 1727718 ~ 1732073 (-)
arid1aa arid1a coding downstream 20973 1693034 ~ 1719770 (-)
pigv pigv coding downstream 51771 1685640 ~ 1688972 (-)
zdhhc18a zdhhc18,zdhhc18a,LOC108443430,LOC107734071 coding downstream 56902 1673762 ~ 1683841 (-)
fhl3a fhl3,fhl3a,LOC107587754,LOC107716861,LOC107704953 coding upstream 93144 1850900 ~ 1880574 (-)
pou3f1 pou3f1,LOC107755232,LOC103364690 coding upstream 166794 1924550 ~ 1928003 (-)
rragca rragc,rragca,LOC108434187,LOC107700741,LOC107704952,LOC107716860,LOC106605136 coding upstream 379050 2136806 ~ 2147980 (-)
LOC113526881 LOC108269985 coding upstream 394000 2151756 ~ 2155178 (-)
preb preb coding upstream 495500 2253256 ~ 2262331 (-)
G1029 NA non-coding downstream 90255 1649521 ~ 1650488 (-)
LOC117599299 NA non-coding downstream 95310 1644042 ~ 1645433 (-)
G1024 NA non-coding downstream 105894 1634613 ~ 1634849 (-)
G951 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 non-coding downstream 146669 1582333 ~ 1594074 (-)
G943 NA non-coding downstream 160777 1579758 ~ 1579966 (-)
G1089 NA non-coding upstream 91770 1849526 ~ 1849727 (-)
G1100 NA non-coding upstream 111890 1869646 ~ 1872700 (-)
LOC113526561 NA non-coding upstream 354600 2112356 ~ 2129427 (-)
G1216 tgfb2,LOC106605021,LOC106584161 non-coding upstream 405568 2163324 ~ 2165381 (-)
G1237 NA non-coding upstream 492009 2249765 ~ 2250408 (-)
G502 NA other downstream 1141577 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 1553896 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 1574674 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 1685590 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 1719460 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 630892 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 683090 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 1160467 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 1486079 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 1900424 3658180 ~ 3659319 (-)

Expression


Co-expression Network