G1238


Basic Information

Item Value
gene id G1238
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2264375 ~ 2264574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU1533
TCagatcccagcaccaccaagctgccactgctgggcccttgagcaaggtcctCAACCCTCAACCTTAACCCTTagttgtgtaaatgagataattgtaagtcgctatggataagggcgtctgccaaatgccgtaaatgtaactgtagatggtacaaaatgaagacaaattgCAGAAGAGAGACAGTTTCATGAGGTTTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1533 True 200 lncRNA 0.37 1 2264375 2264574

Neighbor

gene id symbol gene type direction distance location
preb preb coding downstream 2044 2253256 ~ 2262331 (-)
LOC113526881 LOC108269985 coding downstream 109197 2151756 ~ 2155178 (-)
rragca rragc,rragca,LOC108434187,LOC107700741,LOC107704952,LOC107716860,LOC106605136 coding downstream 116395 2136806 ~ 2147980 (-)
pou3f1 pou3f1,LOC107755232,LOC103364690 coding downstream 336372 1924550 ~ 1928003 (-)
fhl3a fhl3,fhl3a,LOC107587754,LOC107716861,LOC107704953 coding downstream 383801 1850900 ~ 1880574 (-)
cnih4 cnih4,LOC107703927 coding upstream 30275 2294849 ~ 2299066 (-)
rspo3 rspo3 coding upstream 48535 2313109 ~ 2326539 (-)
trmt11 trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854 coding upstream 160177 2424751 ~ 2438715 (-)
osbpl10b osbpl10,LOC108434204,LOC107713824,LOC108270254,LOC107600617,LOC107668315 coding upstream 469937 2734511 ~ 2775211 (-)
kiaa1143 kiaa1143 coding upstream 523618 2788192 ~ 2790721 (-)
G1236 NA non-coding downstream 11983 2250950 ~ 2252392 (-)
G1237 NA non-coding downstream 13967 2249765 ~ 2250408 (-)
G1216 tgfb2,LOC106605021,LOC106584161 non-coding downstream 98994 2163324 ~ 2165381 (-)
LOC113526561 NA non-coding downstream 134948 2112356 ~ 2129427 (-)
G1100 NA non-coding downstream 391675 1869646 ~ 1872700 (-)
G1303 NA non-coding upstream 113254 2377828 ~ 2378028 (-)
G1422 NA non-coding upstream 284204 2548778 ~ 2553558 (-)
G1425 NA non-coding upstream 325911 2590485 ~ 2639703 (-)
G1421 NA non-coding upstream 348683 2613257 ~ 2656299 (-)
G1465 NA non-coding upstream 438240 2702814 ~ 2705836 (-)
G502 NA other downstream 1665209 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 2077528 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 2098306 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 2209222 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 2243092 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 124074 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 176272 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 653649 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 979261 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 1393606 3658180 ~ 3659319 (-)

Expression


Co-expression Network