Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU1533 |
| length | 200 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G1238 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047595.1 |
| NCBI id | CM018541.1 |
| chromosome length | 35600603 |
| location | 2264375 ~ 2264574 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1531 | lncRNA | downstream | 11983 | 2250950 ~ 2252392 (-) | True | G1236 |
| TU1532 | lncRNA | downstream | 13967 | 2249765 ~ 2250408 (-) | True | G1237 |
| TU1506 | lncRNA | downstream | 98994 | 2163324 ~ 2165381 (-) | True | G1216 |
| XR_003402788.2 | lncRNA | downstream | 134948 | 2112356 ~ 2129427 (-) | True | LOC113526561 |
| TU1368 | lncRNA | downstream | 391675 | 1869646 ~ 1872700 (-) | True | G1100 |
| TU1609 | lncRNA | upstream | 113254 | 2377828 ~ 2378028 (-) | True | G1303 |
| TU1605 | lncRNA | upstream | 124129 | 2388703 ~ 2400232 (-) | False | cenpw |
| TU1745 | lncRNA | upstream | 284204 | 2548778 ~ 2553558 (-) | True | G1422 |
| TU1749 | lncRNA | upstream | 325911 | 2590485 ~ 2639703 (-) | False | G1425 |
| TU1744 | lncRNA | upstream | 348683 | 2613257 ~ 2656299 (-) | True | G1421 |
| XM_026914229.2 | mRNA | downstream | 2044 | 2253256 ~ 2262331 (-) | False | preb |
| XM_026914228.2 | mRNA | downstream | 2126 | 2253256 ~ 2262249 (-) | True | preb |
| XM_026914304.2 | mRNA | downstream | 109197 | 2151756 ~ 2155178 (-) | True | LOC113526881 |
| XM_026913723.2 | mRNA | downstream | 116395 | 2136806 ~ 2147980 (-) | True | rragca |
| XM_026914110.2 | mRNA | downstream | 336372 | 1924550 ~ 1928003 (-) | True | pou3f1 |
| XM_026913416.2 | mRNA | upstream | 30275 | 2294849 ~ 2299066 (-) | True | cnih4 |
| XM_026914403.2 | mRNA | upstream | 48535 | 2313109 ~ 2326539 (-) | True | rspo3 |
| XM_026914141.2 | mRNA | upstream | 124074 | 2388648 ~ 2400257 (-) | True | cenpw |
| XM_026913455.2 | mRNA | upstream | 160177 | 2424751 ~ 2438715 (-) | True | trmt11 |
| XM_026913451.2 | mRNA | upstream | 181155 | 2445729 ~ 2451519 (-) | True | hint3 |
| XR_004578099.1 | other | downstream | 1586575 | 677401 ~ 677800 (-) | True | LOC117597201 |
| TU694 | other | downstream | 1665209 | 598781 ~ 599166 (-) | True | G502 |
| TU238 | other | downstream | 2098306 | 158802 ~ 166069 (-) | True | ptpn6 |
| TU237 | other | downstream | 2102309 | 158802 ~ 162066 (-) | False | ptpn6 |
| TU214 | other | downstream | 2125531 | 137374 ~ 138844 (-) | False | spag1b |
| XR_004578455.1 | other | upstream | 176272 | 2440846 ~ 2451520 (-) | False | hint3 |
| TU1883 | other | upstream | 653754 | 2918328 ~ 2919811 (-) | False | eny2 |
| TU2085 | other | upstream | 979261 | 3243835 ~ 3281162 (-) | True | G1718 |
| TU2447 | other | upstream | 1393606 | 3658180 ~ 3659319 (-) | True | G2011 |
| TU2456 | other | upstream | 1409672 | 3674246 ~ 3675836 (-) | True | G2020 |
