RNA id: XM_026914110.2


Basic Information

Item Value
RNA id XM_026914110.2
length 3454
RNA type mRNA
GC content 0.50
exon number 1
gene id pou3f1
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1924550 ~ 1928003 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGCTGCTCTCTGTCTTGACTATCggggagaaggagaagaaagggATTTCAAACGAGAGAGAAAGCATTGTGAAAGCCGCCAATTGCGAGTAACTGGGCTCGCGGCGGGAGACAGCCAACCAAGCAGCCCGCGCGAGGGGAAAACACGAAGCGTCAGTAGAGCTCGAGGCGGCCAGCAGCCAATACACGCGCAGGGGAGGCGTGTCCGCGCGCTGCTCCAGCGCCTCCCCGCGTGGGCTGTCGCGCTCGCGCTCTAAAAAGCACTCTCACCTCCGGAGCGCGCGTCAGTTTTCGGAGTCGGAGCCATGGCGACGACAGCTCAGTATATCCCGCGGAATAACTCGTTGCCTTCCAACCCTCTCATGCACCCGGACTCGGACCGGATGCACCAGGGCACGACCTATCGAGAAGTGCAGAAGATGATGCACCACGAGTATCTTCAAGGGCTCGCGGCGTCCAACGCGGGCCACCCGATGAGCCTGACGCACCACCAGTGGCTGCCCACATCCGGCGCGGACTGGAGCAGCGGGACGCACCTCGGCCAGCAGCCGGAGCACAAGGCCAGCGTGCCTGCGAGCCGCGAGGAGCTGACCAGCGGCTACCACAGGTCGCACCTGGTGCACCAAGCTGCACAGAACGGTCACCACGGCTCGTGGGCGCCGAGCAGCACCACGCATCACCTGTCACCGCTGTCGCCCGCTTCCGGGGGCCACCAGTCACTGGTCTACTCTCAGACGGGCTATGCTATGCTGAGCCCGCAACCGTCGCTGCATCACGGCATGCGCGAGCCGCTGCACGACGATGCCGGCGGTCACGAACACCAGCTCGAGTCGCCGCAGCAGCCGTTTGGGCACCACCAGGACCACTCAGACGAGGACGCGCCCAGCTCCGACGACCTTGAGCAGTTCGCCAAGCAGTTTAAGCAGCGGCGCATCAAACTCGGCTTCACGCAAGCGGACGTGGGGCTTGCGCTCGGCACGCTCTACGGCAACGTGTTCTCCCAGACCACTATCTGCAGGTTCGAGGCGCTACAGCTCAGTTTCAAGAACATGTGCAAACTTAAGCCGCTGCTCAACAAATGGCTAGAGGAGACAGACTCGAACACAGGCAGCCCGACTAACTTGGACAAGATCGCGGCGCAGGGCCGCAAGCGCAAGAAGAGGACCTCGATCGAGGTCGGGGTGAAAGGGGCGCTGGAGAACCACTTCCTCAAGTGCCCCAAGCCCTCGGCGCACGAGATCAGCACGTTGGCCGGCACGCTGCAGCTGGAGAAAGAGGTCGTGCGCGTGTGGTTTTGCAacaggagacagaaagagaaaaggatgaCCCCGGTGGGGGTCGCGCATCCGAGCATGGAGGACGTTTACTCACAGGCGGAGACCCCTCCGCTTCACCACACGCTACAGAGCCCCGTCCAGTGACTGTCCTCCTGAGTGAAGCTCTTATttcaacacaaacaaaacaagaacatCGATAGAGAAAAAGGGGACTAGGGATTTcacagtatttaattttttttgcatttgttatcCCGAGTGACAATGCACGCAGCAAAGTTGGGTGAAAAAGAGTTTCTGGCCGCAGACCGGAGACTGTGGCGCAACAACAGCAGACGGGACGCAGATCATAAAGGGGGaacaaaatgcatgaatgacTGCAGAGTCAAATTGAGGTGCATTTCACTAAAATCGTATTGATTTGAATGCGTTCTGGTGGAGAAAAAGAATAATTCGATTATTTCAGCGCTGCTCAAAAGGAGCCATATGCCACAAAAGAGATGTTTTCTCTCCTCGCTGTCGCAGGTTTAATCCGAGCTGGTGGttgtctgagctgctgtcaGCTAAAAGGACACAGTCACGTTTTCTACATTATAACACTTAACACAGTCACTGTTGCGGTGTAGTTGTCAGATCATTTTTGTGATGTTTACTTTATTTGGGATGTTTTAACCTTTTTCCGTTTcaatgttgtgtttgttttactgtttcTGACCATTTTGGACTTTTTCGTGTATTTTTTGCATTACTGACAGCTCACACATTTTGTCAGCGCCACTGAGCCATAATTTGGAGATGTATCTTGTTTACAGATGTCCGATATATTAGCACCTGATTTCCTCTAACCTGTAGAAAAGAGGctacagtcagtcagtcagtcagtcagcctTCATGGGCTGAAACACACGAGTTTGTCATTTTGCGTTTCactattttccctcttttttatAAGCACTTATTCTTGCGTTAACATGCtcgcagttatttatatttttgtcatgatGACTAAAGTGTGATAGTTTTGTGATAGGATGTACAACGAGGCGGTTTCTTGTTTACAGTTTCCGGATCATCCAAATGACGGAGTCATCGAGAAtcaatagtgttttttttttttaaacaggctGACCTGGTTTTCGGAAGTAAGAGGGAGAAAGTGGAAGTAAAAGTAATATCTCAGGTAAATTTCAGCGCCCGTATATTGTGCTGTACTCCTTTACTTCTGTCTTGTAGTCATCGGCCCAGGCCGGTGGTGCCCAGGCCAGTGGTGCCCGGGCCGGTGGTGCCCAGGCCGGTGGTGCCCGGGCCGGTGGTGCCCAGGCCGGTGGTGCCCGGGCCGGTGGTGCCCGGGCCGGTGGTGCCCGGGCCGGTGGTGCCCGGGCCGGTGGTGCCCAGGCGGTGTCCCTCTGAAGCAGCCCGAGTCCGCACACTAGCGCTCTGAGTAGCAGGTTAAAACAGTAGACAGCTTATTTGGACGTACTGTTTAGAAGTGTAGTGTCTGGACGTAGCTGTGGTCGCTCGGATTTATTCCCTACTGGTCTGTAAACGAATAGAGGAAGACGTTGTGCTGATGAAATTATCCGCTGTGggattatttattgttttctgAGAGCAGGACATGAAAGAGGGGTCGTGAATAAGTCGTGCGTTTCGTGTCGTTTCTCAAGGCATCTGTGAGTGAGCAGCTGGGAGCAGgtgttcatttctttcttttttttattttattttggcaATTCTGTTATTTGAAACCGTGTGGGATATAcaacttttccaaaaaaaaaagaaaaaaaaatgaaaagattttaaataaatagttgtCATTATTATTTCCAATATGTAAATATGTCCAATATGTAAACATATGTATTTGTTCTgagtttgttttggattttttttttctttttgttctttccgGGCAGTTTTGTACACTTACTAATtccaagaaaatattttaatatttcatttatggatttgaccatttatatatctatatatttatttcttaaagttgTTCGGAGCTTTCTGTTTGGCTCTGTTAATTATGTTGCAGTGAATTAcagatgtttttgtttactacatTGGTTGTATGTTGATTGCGAAATGTAGACTGCAAAGTCacgtttatatttatgttatagtaatattttattacttacataaaaCGTATATTCGAGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1368 lncRNA downstream 51850 1869646 ~ 1872700 (-) True G1100
TU1357 lncRNA downstream 74823 1849526 ~ 1849727 (-) True G1089
TU1285 lncRNA downstream 274062 1649521 ~ 1650488 (-) True G1029
XR_004579758.1 lncRNA downstream 279117 1644042 ~ 1645433 (-) True LOC117599299
TU1280 lncRNA downstream 289701 1634613 ~ 1634849 (-) True G1024
XR_003402788.2 lncRNA upstream 184353 2112356 ~ 2129427 (-) True LOC113526561
TU1506 lncRNA upstream 235321 2163324 ~ 2165381 (-) True G1216
TU1532 lncRNA upstream 321762 2249765 ~ 2250408 (-) True G1237
TU1531 lncRNA upstream 322947 2250950 ~ 2252392 (-) True G1236
TU1533 lncRNA upstream 336372 2264375 ~ 2264574 (-) True G1238
XM_026914145.2 mRNA downstream 43976 1850900 ~ 1880574 (-) True fhl3a
XM_026913668.2 mRNA downstream 166794 1740743 ~ 1757756 (-) True gnl2
XM_026913669.2 mRNA downstream 186185 1733410 ~ 1738365 (-) True snip1
XM_026913670.2 mRNA downstream 192477 1727718 ~ 1732073 (-) True gpn2
XM_026913724.2 mRNA downstream 204780 1693034 ~ 1719770 (-) True arid1aa
XM_026913723.2 mRNA upstream 208803 2136806 ~ 2147980 (-) True rragca
XM_026914304.2 mRNA upstream 223753 2151756 ~ 2155178 (-) True LOC113526881
XM_026914229.2 mRNA upstream 325253 2253256 ~ 2262331 (-) False preb
XM_026914228.2 mRNA upstream 325253 2253256 ~ 2262249 (-) True preb
XM_026913416.2 mRNA upstream 366846 2294849 ~ 2299066 (-) True cnih4
XR_004578099.1 other downstream 1246750 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 1325384 598781 ~ 599166 (-) True G502
TU238 other downstream 1758481 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 1762484 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 1785706 137374 ~ 138844 (-) False spag1b
XR_004578455.1 other upstream 512843 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 990325 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 1315832 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 1730177 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 1746243 3674246 ~ 3675836 (-) True G2020

Expression Profile