RNA id: XM_026913670.2


Basic Information

Item Value
RNA id XM_026913670.2
length 1652
RNA type mRNA
GC content 0.44
exon number 5
gene id gpn2
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1727718 ~ 1732073 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACCCGGATGTGATCATAGTGGCTGCATTTATTATTTCACGTTGTGgagcagtttttaaaaaatcctctaACATATCTTGTATTGTTGTATTCATTTACTAATTgagacttttttgtttgtttgttcgggTTGGATAATTAATTCTGCAGCACATATTTGCATATCTGTCTGTTATTCTGCTGGTTTGTTGTTCCTCCACTTCATGCCCAGGTGGAAAGGAGAAGAGTTTGCGTCACGTGTTTGAGTGTAAACAGACTGATATTAACACCTAGCCTTATTATTCATACTCTAATGATAGAAACTTCTTAGCTCGCTATCAGGTGCTCTTATAAGcctgttgttttgtgtttccttcCTTTTGTACCAGCGTGAACATCATGTATCTACAAGCCTCACTATCTCACTGCCTCTGCTAGTTAAGTGATAGTTTAGTTTATGAGTTAATGAGTTAATGAGTTTGGATTGGTTTGACTAGTCTGTGTGGCTGAGAGCCATGAGCACTTCCCCTGGAGCTCAGCAGGCTTCTCTGCGCTTTGGCCAGGTCGTTATTGGGCCACCTGGCTCAGGTAAAACGACCTACTGCCGAGGCATGCATGACTTCCTGAGTCAAGTAGGGCGCAAAGTCGTGGTAATAAACCTGGATCCTGCAAACGAAGGACTGCCTTATCAGTGTGCAGTGGACATCTCGGAGCTAGTCACACTTGAAGATGTGATGGAGGGTCTGAAACTAGGCCCTAACGGTGGCCTCATCTATTGCATGGAGTATTTAGAGGCCAATCTGGACTGGTTAAAGGCTAAACTGCAGCAGCACCATGACTGCTACTTCCTGTTTGACTGCCCTGGTCAGGTGGAGCTTTACACTCATCACGGTGCAGTGCGAAATATATTTGCCCAGCTATCCAAGTGGAATTTCAGGTTGACTGCAGTGCATCTGGTGGACTCTCATTACTGCGCTGATCCAGCCAAGTTCATTTCTGTGCTCTGCACCTCGCTGTCCACCATGCTTCAGGTGGAGCTGCCTCACGTCAATGTTCTCTCCAAGATGGACCTCATTGAGCAGTACGGCAAGCTGGCCTTCAATCTTGATTTCTACACGGAGGTTATGGACCTGTCGTACCTGGTGGAACATTTAGCCACCGACCCGTTTTTTAAGAAGTTCCACCATCTGAATGAGAAGTTGGCTGAGGTGATTCAGGACTACGGCCTCGTGTCGTTTGTCCCTCTGAATGTGCAGGACAAGGAGAGCATGATGCAGGTCCTCCGCACAGTGGACAAGGCCAATGGCTACTGCTTCGGTGACTTGGAGGAGAGAAATCTGCAGGCTATGATGTCTGCTGCTGTTGGTGCAGATTTTCAGTTTAACTTAGCTCTTGGAGTACAAGAGAGATATGTGGAAACCAACAAAAAGACTTTGGAAGAAGAGGTCATGGACTTGTAACTGCAATAAAAGCTAAATTTAGTGACTTGTTATTGACTTGACTGTCTTTCCTAAATAGAAGGTTTTGAAGTTTTAAGATTATTTGTAGTAGACAAACAAATTTAAACCATGTACAAAATGTGAGCACCTACCATGAACATTTTCAGAATGAGGACTGGAGTCTGCAGGAATAGCCGTATTTcagtaagaaaataaataaataaataacttt

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG:

id description
K24104 GPN; GPN-loop GTPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1285 lncRNA downstream 77230 1649521 ~ 1650488 (-) True G1029
XR_004579758.1 lncRNA downstream 82285 1644042 ~ 1645433 (-) True LOC117599299
TU1280 lncRNA downstream 92869 1634613 ~ 1634849 (-) True G1024
TU1190 lncRNA downstream 133644 1582333 ~ 1594074 (-) False G951
TU1357 lncRNA upstream 117453 1849526 ~ 1849727 (-) True G1089
TU1368 lncRNA upstream 137573 1869646 ~ 1872700 (-) True G1100
XR_003402788.2 lncRNA upstream 380283 2112356 ~ 2129427 (-) True LOC113526561
TU1506 lncRNA upstream 431251 2163324 ~ 2165381 (-) True G1216
TU1532 lncRNA upstream 517692 2249765 ~ 2250408 (-) True G1237
XM_026913724.2 mRNA downstream 7948 1693034 ~ 1719770 (-) True arid1aa
XM_026913692.2 mRNA downstream 38746 1685640 ~ 1688972 (-) True pigv
XM_034304508.1 mRNA downstream 43877 1673762 ~ 1683841 (-) False zdhhc18a
XM_026913669.2 mRNA upstream 1337 1733410 ~ 1738365 (-) True snip1
XM_026913668.2 mRNA upstream 8670 1740743 ~ 1757756 (-) True gnl2
XM_026914145.2 mRNA upstream 118827 1850900 ~ 1880574 (-) True fhl3a
XM_026914110.2 mRNA upstream 192477 1924550 ~ 1928003 (-) True pou3f1
XM_026913723.2 mRNA upstream 404733 2136806 ~ 2147980 (-) True rragca
XR_004578099.1 other downstream 1049918 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 1128552 598781 ~ 599166 (-) True G502
TU238 other downstream 1561649 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 1565652 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 1588874 137374 ~ 138844 (-) False spag1b
XR_004578455.1 other upstream 708773 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 1186255 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 1511762 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 1926107 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 1942173 3674246 ~ 3675836 (-) True G2020

Expression Profile