RNA id: TU1190


Basic Information

Item Value
RNA id TU1190
length 1484
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G951
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1582333 ~ 1594074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGGGCAAGCACATCATGGATGCAATCAAcaatttgtatttgcattttaagGAAAACAGTTGAATACTGCAAATTACAGCAATACCAAACAAACTTCTTTTcctgtaaaaatgtaaagaacacTTTGCAGCTGCAGCCACCGTACATATGTATTACTCTGggcaaaaatattaactttaaaatCCCATTGCAGGGAAACTTCCTAAAACCTCTGTTTAAACTATcaatacattacatacatacgTTTACTCACAGCTGGCAATCATCACAATGCTTACTACCGATTCGCATTAAAAAGAATtaagaaaaagaagcaaaaatacaggttttaaaaaatagtcTTTTTGATCATGATCTGCTGGAACGCACCCAGTGAATGCTTGGGCTCTCCACAAAGTGGGAGAAACGTTTAATCAGATGAGACCCACCCATCTTTACCTCATCACACATCTCCAATCTTGCCTAACCAACTAGCTCGGTACAGTACAGGAAGTTTAAGCAACCCCAAATTTCCCCCAGTATCCCAGATCAAGCTATATTTTTACAATTACCACCAGAACAGTAGTACAGCTCAGCTTTCAGCATTTGGGTTTAATATCAGCTCTCTTGCTTGTCTTTGACCAGTAAGACTGTGTGCTGCCCTCCActggagacagacagaacaaCCCTGTTCTCCAGCTGCTTGCCCACCATCTCCACTGGGCTCCAAGCGTCATCTTCATCTCCTGTGCCCAGCTGCAGGTTGGTGCCCATGCCCCAGGCATATACAGAGCCTTCTTTAGTGACTGCatagctcacagatgctccacaCGCTACCACGCAGGCCCTGGAGATTCCCGTAACTGCTGTGGGCTCACTCTTTTCCGTCACACCCTCTCCCAGGCCCAGACGCCCATACTCAGCCCGGCCAAGACTGTAAACCTGCCCTGCAAGCAAACAACTCAAATTGACGctcaagattttttaaattcacgGTTTTATTCATCCTTGAACAACTGTAgtatgtatacagtactgtgcaaaagtcttaggcacatgcaaataaatgctgtagagcaaagatgccttcaaaaataatgaaattaaatgtttctacattaaaacaaatcctataaagagcagtaaacagtaataaatgaaacaaagtcaatatttggtgtgatgatccttcgcttttaaaataaagcagtatctgaggtgcagtgtgtgcagttttataaggaaatgagctggaagtgttactgagcatcttgcagaagcagccacagttcttctggagactttgactgtcgactcgcttcttatttctgcagcgaaacccagcagccttcattatgtttttatctgaaaagtgtctcttatggaatctgctgctttctttactgacatacaaacatttttctgtaacatttcagtttgtgctggaaaactaatgtttggaatctaaaatgttttgtactgaatcaataatgtagaagtcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1180 lncRNA downstream 2367 1579758 ~ 1579966 (-) True G943
TU1086 lncRNA downstream 134879 1438630 ~ 1447454 (-) True G857
TU829 lncRNA downstream 433309 1037960 ~ 1149024 (-) True G614
TU849 lncRNA downstream 555062 984484 ~ 1027271 (-) True G632
TU776 lncRNA downstream 793520 788612 ~ 788813 (-) True G570
TU1280 lncRNA upstream 40539 1634613 ~ 1634849 (-) True G1024
XR_004579758.1 lncRNA upstream 49968 1644042 ~ 1645433 (-) True LOC117599299
TU1285 lncRNA upstream 55447 1649521 ~ 1650488 (-) True G1029
TU1357 lncRNA upstream 255452 1849526 ~ 1849727 (-) True G1089
TU1368 lncRNA upstream 275572 1869646 ~ 1872700 (-) True G1100
XM_026914367.2 mRNA downstream 155272 1421790 ~ 1427061 (-) True stmn1b
XM_026914130.2 mRNA downstream 161581 1413070 ~ 1420752 (-) True paqr7b
XM_026914148.2 mRNA downstream 518111 1045876 ~ 1064222 (-) False si:dkey-34d22.1
XM_034307703.1 mRNA downstream 518717 1045876 ~ 1063616 (-) True si:dkey-34d22.1
XM_026913421.2 mRNA downstream 539481 1039296 ~ 1042852 (-) True rab42b
XM_026914076.2 mRNA upstream 7250 1601324 ~ 1610701 (-) False oprd1b
XM_026914075.2 mRNA upstream 7250 1601324 ~ 1608383 (-) True oprd1b
XM_026913937.2 mRNA upstream 25972 1620046 ~ 1632254 (-) False tcea3
XM_026913938.2 mRNA upstream 25972 1620046 ~ 1632254 (-) False tcea3
XM_026913939.2 mRNA upstream 25972 1620046 ~ 1632254 (-) False tcea3
XR_004578099.1 other downstream 904533 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 983167 598781 ~ 599166 (-) True G502
TU238 other downstream 1416264 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 1420267 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 1443489 137374 ~ 138844 (-) False spag1b
XR_004578455.1 other upstream 846772 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 1324254 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 1649761 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 2064106 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 2080172 3674246 ~ 3675836 (-) True G2020

Expression Profile