RNA id: TU829


Basic Information

Item Value
RNA id TU829
length 1411
lncRNA type read_through
GC content 0.42
exon number 3
gene id G614
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1037960 ~ 1149024 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGATCCCTAAGGAGGGGGGACGTTCAGAGTTCGTACTGTGAAGGGTAAAGCTGCAGCCCTTGTGTCTGTATGTGCATCTTATAGATACAACGATCAGCGATAACACAGTCACCAATCGGTgaccactgacaagtgaagtgaataacattgattatctcattagcATCTGTcatggggtgggatatattaggcagcaagtgaacagtcagttctcagagttgatgtgttggaagcaggaaagatgggcaagcgtaaggatctgagcgactttgacaaggtcttgtggggtgttcctgctatgcagtggttagtacctaccaaaagtggtctgaggaaggacaaccggtgaacatGTGGGGAGTGATGGCTTGCCCATAgcctggtccgatcccacagaagagctactgtagcacaaattgctgaaaaagttaaagctggctctgaaagaaaggagtcagaacacacagtgcagtgcagcttgctgcaaagctcctacaatgggctcatgagcatcagaactggaccatggagcaatggaagaaggtggcctggtctgatgaatcacgttttcttttacatcatgtggacggccgggtgcgtgtgcatcacttacctggggaagagatggcattaggatgcactatgggaagaaggaaagctggcggaggcagtgtgatggtctgggcaatgttctgctgggaaatcttgggtcctgacattcatgtggatgctactttgacacgtaccacctacctaaacattccTGCAGACCAAgttacactccttcatggcaatggtatttcctaatggcagtggcctctttcagcaggataatgctccctgacacactgcaaacattgttcaggaacggtttgaggaacatgacaaagagttcaaggtgttgacttggcctccaaattccccagatctcaatccagtcgagcatctgtgggacgtgctggacaaacaagtctgatccatggaggctccacctcacaacttacaggacttaaaggatctgctgctaaagtcttggtgccagataccacacacaccttcagaggtcttgtggagtccatgcctcgacgggtcagagctgttttggtggcacaaggagacctacacaatattaggcaggtggttttaatgttatggctgatctgtgtatatattatatagttgTATTTGTATCTGCTTTGGCTTTTTGAAGATCAAAACATGGctaaatatcttaaaatcacaTAATTGTCATATAGAACCCTATAATTCCCAGGTCTCGTTCTGGTAAATAGTTATTTAACTGGGGTGTTGTACAGACTCTGTTTCAGGGTACACATCTGTTGCACTTGTCTCTCTGCTGCTTTACAGCCATATTCGCCTGgtccttttcattttttggtAAGAAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU849 lncRNA downstream 10689 984484 ~ 1027271 (-) True G632
TU776 lncRNA downstream 249147 788612 ~ 788813 (-) True G570
TU773 lncRNA downstream 256465 777910 ~ 781495 (-) True G568
TU752 lncRNA downstream 314138 723551 ~ 723822 (-) True G553
TU755 lncRNA downstream 314853 722751 ~ 723107 (-) True G555
TU1086 lncRNA upstream 289606 1438630 ~ 1447454 (-) True G857
TU1180 lncRNA upstream 430734 1579758 ~ 1579966 (-) True G943
TU1190 lncRNA upstream 433309 1582333 ~ 1594074 (-) False G951
TU1189 lncRNA upstream 433936 1582960 ~ 1594074 (-) True G951
TU1280 lncRNA upstream 485589 1634613 ~ 1634849 (-) True G1024
XM_026914059.2 mRNA downstream 57698 976649 ~ 980262 (-) True cited4b
XM_026913869.2 mRNA downstream 90398 926724 ~ 947562 (-) False si:ch211-1i11.3
XM_026913868.2 mRNA downstream 90398 926724 ~ 947562 (-) True si:ch211-1i11.3
XM_034306099.1 mRNA downstream 90398 929561 ~ 947562 (-) False si:ch211-1i11.3
XM_034305093.1 mRNA downstream 119337 876545 ~ 918623 (-) True map7d1a
XM_026914130.2 mRNA upstream 264046 1413070 ~ 1420752 (-) True paqr7b
XM_026914367.2 mRNA upstream 272766 1421790 ~ 1427061 (-) True stmn1b
XM_026914076.2 mRNA upstream 452300 1601324 ~ 1610701 (-) False oprd1b
XM_026914075.2 mRNA upstream 452300 1601324 ~ 1608383 (-) True oprd1b
XM_026913937.2 mRNA upstream 471022 1620046 ~ 1632254 (-) False tcea3
XR_004578099.1 other downstream 360160 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 438794 598781 ~ 599166 (-) True G502
TU238 other downstream 871891 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 875894 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 899116 137374 ~ 138844 (-) False spag1b
XR_004578455.1 other upstream 1291822 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 1769304 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 2094811 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 2509156 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 2525222 3674246 ~ 3675836 (-) True G2020

Expression Profile