G614


Basic Information

Item Value
gene id G614
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1037960 ~ 1149024 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU829
CTGATCCCTAAGGAGGGGGGACGTTCAGAGTTCGTACTGTGAAGGGTAAAGCTGCAGCCCTTGTGTCTGTATGTGCATCTTATAGATACAACGATCAGCGATAACACAGTCACCAATCGGTgaccactgacaagtgaagtgaataacattgattatctcattagcATCTGTcatggggtgggatatattaggcagcaagtgaacagtcagttctcagagttgatgtgttggaagcaggaaagatgggcaagcgtaaggatctgagcgactttgacaaggtcttgtggggtgttcctgctatgcagtggttagtacctaccaaaagtggtctgaggaaggacaaccggtgaacatGTGGGGAGTGATGGCTTGCCCATAgcctggtccgatcccacagaagagctactgtagcacaaattgctgaaaaagttaaagctggctctgaaagaaaggagtcagaacacacagtgcagtgcagcttgctgcaaagctcctacaatgggctcatgagcatcagaactggaccatggagcaatggaagaaggtggcctggtctgatgaatcacgttttcttttacatcatgtggacggccgggtgcgtgtgcatcacttacctggggaagagatggcattaggatgcactatgggaagaaggaaagctggcggaggcagtgtgatggtctgggcaatgttctgctgggaaatcttgggtcctgacattcatgtggatgctactttgacacgtaccacctacctaaacattccTGCAGACCAAgttacactccttcatggcaatggtatttcctaatggcagtggcctctttcagcaggataatgctccctgacacactgcaaacattgttcaggaacggtttgaggaacatgacaaagagttcaaggtgttgacttggcctccaaattccccagatctcaatccagtcgagcatctgtgggacgtgctggacaaacaagtctgatccatggaggctccacctcacaacttacaggacttaaaggatctgctgctaaagtcttggtgccagataccacacacaccttcagaggtcttgtggagtccatgcctcgacgggtcagagctgttttggtggcacaaggagacctacacaatattaggcaggtggttttaatgttatggctgatctgtgtatatattatatagttgTATTTGTATCTGCTTTGGCTTTTTGAAGATCAAAACATGGctaaatatcttaaaatcacaTAATTGTCATATAGAACCCTATAATTCCCAGGTCTCGTTCTGGTAAATAGTTATTTAACTGGGGTGTTGTACAGACTCTGTTTCAGGGTACACATCTGTTGCACTTGTCTCTCTGCTGCTTTACAGCCATATTCGCCTGgtccttttcattttttggtAAGAAAGACA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU829 True 1411 lncRNA 0.42 3 1037960 1149024

Neighbor

gene id symbol gene type direction distance location
cited4b LOC108269595 coding downstream 57698 976649 ~ 980262 (-)
si:ch211-1i11.3 LOC108271733,LOC108268173,LOC108433596 coding downstream 90398 926724 ~ 947562 (-)
map7d1a map7d1 coding downstream 119248 876545 ~ 918712 (-)
thrap3a LOC108269500 coding downstream 186743 831546 ~ 851217 (-)
sh3d21 sh3d21 coding downstream 207605 814535 ~ 830355 (-)
paqr7b paqr7b,LOC100305063,LOC108443418,LOC107732831,LOC107587883,LOC107700726 coding upstream 264046 1413070 ~ 1420752 (-)
stmn1b stmn1,stmn1b,LOC107700727,LOC107597104,LOC107587743,LOC103040240 coding upstream 272766 1421790 ~ 1427061 (-)
oprd1b oprd1,LOC108272459,LOC104938665,LOC107595906,LOC101079075,LOC101163183,LOC108249715,LOC107587885,LOC107735168,LOC107700731,LOC107756112 coding upstream 452300 1601324 ~ 1610701 (-)
tcea3 tcea3,LOC108269926,LOC108443426,LOC103044436 coding upstream 471022 1620046 ~ 1632254 (-)
tent5ba fam46b,fam46ba,LOC108443429,LOC107734389,LOC107597110,LOC107587747,LOC107700733,LOC107704962 coding upstream 504421 1653445 ~ 1659672 (-)
G632 NA non-coding downstream 10689 984484 ~ 1027271 (-)
G570 NA non-coding downstream 249147 788612 ~ 788813 (-)
G568 NA non-coding downstream 256465 777910 ~ 781495 (-)
G553 NA non-coding downstream 314138 723551 ~ 723822 (-)
G555 NA non-coding downstream 314853 722751 ~ 723107 (-)
G857 pkib,LOC105417165,LOC107374466 non-coding upstream 289606 1438630 ~ 1447454 (-)
G943 NA non-coding upstream 430734 1579758 ~ 1579966 (-)
G951 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 non-coding upstream 433309 1582333 ~ 1594074 (-)
G1024 NA non-coding upstream 485589 1634613 ~ 1634849 (-)
LOC117599299 NA non-coding upstream 495018 1644042 ~ 1645433 (-)
G502 NA other downstream 438794 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 851113 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 871891 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 982807 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 1016677 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 1239624 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 1291822 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 1769199 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 2094811 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 2509156 3658180 ~ 3659319 (-)

Expression


Co-expression Network