thrap3a (LOC108269500)


Basic Information

Item Value
gene id thrap3a
gene name LOC108269500
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 831546 ~ 851217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914341.2
CAGTCTATACGCGGTGCATTACGCAGCTGTGGATCAAGGCGCAGGTCAGTGAGTGAgcagctctgctctgctctgctctgctctgctcttcaTTCCTCTCAAGTTTAAACTGCTGAAAGAGGACACTTGGATGTTACCGATTTAGACATTTTGCTTCAGTCAATCAGCCAAAGTGTGATCGATGTCTCTGAATGAGAGATAAGCAAAGAAGACTGTAGTCTTTGGAAGAACATCCGATTCAGGAATCTGGAACATATAAAGTCGTGGCTGGTTTCTGCTACATTCTCTGACAGGAACCTGTAAGCAAGCTCTCCAGCAGTGATGTCTAAGACACCAAGATCTTCTTCCAGAACTTACTCACGATCAGCCTCCAGGTCAAGATCAGGTTCTGACTCTCGCTCCCGCTCCAGGTCTCGAAGCAGCTCGCAGTCTCGTTCGAGGAAGCACCGCTATGGCTCTAGATCTCGCTCTCGGTCCAGATCCCACTCTCCATTCCATAACCGGGGACGGAAACATCCACGGGAATATCAGAACCATCGGGAGTTCAGAGGTTACCACCGAGGCTTCCGGAGGCCTTATTACTTCCGGGGTAGAGGACGAGGCTTCTTCCGTGGCCGATTTCAGCGTGGTGGAGGTGGATACAATAATTATAGATCAAACAACTGGCAAAACTTTGTCCAGCATCCGCAGCAAAAGCAGCAGAaacagcagaagcagcagccgcagcaccagcaccagcaccagcaccagcaccagcaaAGCAGCACTCACAGCCCCAAGAGGGGACGCTCTCACACCCCCAAGAAACGTTCAAACAGCCCGCAATCCCTAAGTCATTCGCACCGCTCTGACAGATCTGCATCACTGCATTCACACCACTCCTCTTCCTCCAGCTCATCCCAACAGATAACTGCTTCAGTTAAGCAGAATTCTAAGGCTGGAATAGAGGTTCTCTCTGCACCTAAGGAAAGCCAGAAAGCTGGAGGAGGAGATGCTACACTGTCAGTGCAAGGAGCGCAACACCCAGAGGTGGATGGAAGTACAAGCGGAGAGAAGACCCCTAAAACATGGCTGTTTCCAATAAATCATGACAGCAGCACAAAGAGGGACAGTCCACATATTCAGTCTGCTGTCAGTGCCGTCCAGGACGATCCAGCCTCCACTGAATCAGGTCCTGTGCCTGGAAATTCAGGAGCAACTAGCAATGGTGCCACCTACAGCCAGACTGTTGCTTCTACTCCCTCTAACAGTAGCCCTCAAAAGAAAAGTCCCACTACAGTTTTCTCAGGCTTTGGGCTTTTTTCAAATGCTGACCAGGAAGAGGATACGGTTGCCATCTCTATAGCTTTTAAAAAATTCTTAGAGGAGCAGAGGAATAAAAAGCAGGCTCTTGCAGATAAAAGCATGGAGAATGTGGCAGACAATGGAAATGCATGTCCTGAAAATAGAAATAGCAAATGTGAAGGCACTTTTGATCGTCTGTCTGGTCCAAAACTGTCCAGGCCTgcagaacaaaacaacaaaaaggagAGTGAAAAGTACAAATACGTAGACAATTTCAAGGGGAACACATCATCCAATAGTTTCAGGCCAGCAATCCTCTCTGAAGAgggggaggaggaagaggatgaggacaCTGAACCCCATCTACAGATGAGGGTTTTGGAGAATGAAGTTCCTAACCGTAAAAGCAAAGTCGCAATGTCGGCTCGTGAACTGTTTGAGGAACATCTCAGGAGGTTGGATGACAGAGCATGGGATGATGAGCTTGAAGCCTTTCTAATAAACCGAGAGAAGGAGAGGGCTGCAAGCATTCTATCTGCTCTGTCTAAGAGGGAGAAGTTTGCACGTAAGTTTGAGGACCTTTCCCCTGAAAGACCCTCAAAAGTGAAACGAAAGGACAAAATGACATTGAGTCCCTCTCCCACATACAAAGCTCCTTCACGAAGGAGCAATGAGTCCCAAGAACCAGAGATGTTCATGAATTTGGGTGATGAATCCTCACCCAGGGCTTcagggaaaagagaaagagagtttaGTCTGAGGATGGATTCTCTTAGTGAAGATCTGGCAAGATCATCTGTTTTGCCTAATGATTGGAGGAATACTATGGATCTTACGCATAGCGATAAAAAGGGACTTCAGCACCGTTGGTGTAATAATTTATGCAGGAGCACAACAGAGCTGTTTGCACAGCATGTCATTTCAATTGTCCATTACGTCACAGCGCAACATTTCTCTTCTTCTGGAATGACTCTAAGCGATCGGTTTACCATGTACCAAAGACTAGCAGCTGAGAAAGAAATCATGAAGCCAAGAAAGAGTCCAGAGATACACAGGAGAATTGATGTTTCTCCCAGTGCTTTTATGAGGCACTCATTCCTGTTTGATGAGTTGAAAGGCTCCGGGGATAGCAGCTCCAAGGCTGAAGGTAAACACTTTAAAGGAGATACAATGGATCTTCCAATGAATGTTGAGCAGCGCAAAAAATATTCAAGCCGAGAGACAAATGAGAAACAGGAAGAGCGAGGGGAATTACGGCAAGCTCCCGAATCAAGCATGGAAAGCTCAACTGAGAAATCATCCATACGCCACAAAAAATCTAAaaagagcaagaaaaaaCGCGAACGTTctcattcctcctcctcctcttcttttgTTCCTGAGGAGGAAACAGATTCTACAGAGAAAAGCTCGGCCCAGCTACAGGTCAGAGAATGTGTTGGATCCGCAGAGACGGGACAGGCACATAGAGGATTTCAGTTCCAAATACGAGGTAGGGGTTGGAACAGAGTGAATTGCCTTGGAAAAGATAGCAAGTGCAATAGCAGTGCTCATGTGCCAGGTCATTCCAACAACATGGACTGGGATTCAGAGCAAATGGCCAAAAGCAAGAAATACTACTTGCTAGATGAAAAGGATGTTGAAGGTGAGAGGAAGTGGGTGAATACCCAAGAGCGTGGCCAGTGTGCCATTCCTCGTGTCAAAGGTCGTTTCATCTTAAGGAGGCCCACCATTTCCATCACCACTAATAACTCTAACTGGAGCCATGACAAGCTCAAGGCcagtggtgatgatggtgaacCAGGCAACAGGGACCACAAGGAGCAAAACAGTGTGTGAGTCATTGCCGAGGCAGCAGGGGCTAGTGAAGAATAACTGGCAGCTTTCGCACACTGCCTAACCCCAGGTGGGCAGGACTCTCAACCCTATCCTGTGTTGGTGGACGAGAGCAGGGAACTGAATCCTCATACACCAACGTTAGCAGTTGCACTTATCAACAGGGGTCTAATACATCTAAGTCTACTTCATAGGAGACCATTAGAAGCCCAGCTATTTCTTTTACTGGAGATATTCTTaacccattttttttaaaagccttttagcactttttatgaatttttgtGCACCTGTGATTGTTGATTTTCATGCAATAACTCGACAATGATCTTTAAAGCATTATAACATATAATAGGTACCTTCAGACCTGGATATGCTGATCTGATTTtgcttaataataatgtaataatttggTGTTGATATAAAGTAAACTCTCACTGGACTCGTACCATATACCACACCAGGGTTTTCCATTGGACAGAGGTCTGTTCTGACTTCCCATCATGAactcctgtcagctcgaacatGGATTCATATGGATCTATTATGGCAGTAAACAAAATTCTGAAAATTATCACTGTTTGTCATGTATAATGAccattgcatttcattttctgttgtGATGCATATTTTTCATGACACTAAATTTTTTCTAAAGATTTTCTCACCATGTTGACCATGTCTCCTTGTCCTTGTATGTCAGTGCTGTGTATTTATAGCTGATGGATTTCTCAGCAGTTTGCTAATTGTTCATGCAATAAATATCTGCAGTACTTTATCAGA

Function

NR:

description
thyroid hormone receptor-associated protein 3-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914341.2 True 3903 mRNA 0.46 12 831546 851217

Neighbor

gene id symbol gene type direction distance location
sh3d21 sh3d21 coding downstream 1191 814535 ~ 830355 (-)
LOC117597201 NA coding downstream 153746 677401 ~ 677800 (-)
colec10 LOC108269102 coding downstream 278759 542668 ~ 552787 (-)
mal2 mal2,LOC107683116,LOC107757438 coding downstream 290967 530944 ~ 540579 (-)
LOC113526714 LOC108269094 coding downstream 307771 519570 ~ 523775 (-)
map7d1a map7d1 coding upstream 25328 876545 ~ 918712 (-)
si:ch211-1i11.3 LOC108271733,LOC108268173,LOC108433596 coding upstream 75507 926724 ~ 947562 (-)
cited4b LOC108269595 coding upstream 125432 976649 ~ 980262 (-)
rab42b rab42 coding upstream 188079 1039296 ~ 1042852 (-)
si:dkey-34d22.1 LOC108269691 coding upstream 194659 1045876 ~ 1064222 (-)
G570 NA non-coding downstream 42733 788612 ~ 788813 (-)
G568 NA non-coding downstream 50051 777910 ~ 781495 (-)
G553 NA non-coding downstream 107724 723551 ~ 723822 (-)
G555 NA non-coding downstream 108439 722751 ~ 723107 (-)
G540 NA non-coding downstream 148982 681106 ~ 682564 (-)
G632 NA non-coding upstream 133267 984484 ~ 1027271 (-)
G614 NA non-coding upstream 186743 1037960 ~ 1149024 (-)
G857 pkib,LOC105417165,LOC107374466 non-coding upstream 587413 1438630 ~ 1447454 (-)
G943 NA non-coding upstream 728541 1579758 ~ 1579966 (-)
G951 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 non-coding upstream 731116 1582333 ~ 1594074 (-)
G502 NA other downstream 232380 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 644699 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 665477 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 776393 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 810263 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 1537431 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 1589629 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 2067006 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 2392618 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 2806963 3658180 ~ 3659319 (-)

Expression


Co-expression Network