G540


Basic Information

Item Value
gene id G540
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 681106 ~ 682564 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU737
TATCTTTAACCTTCTTTATTCATCGATGGAGATCACATGCAGAGGAAAAGACGTGGTGTTTCTCTCACTCCCTGCGGACAGGAATCACAGGAAGTGTTGAGCGTAACTACTCTGTAAATAAGTGCAAATCATTCGATTGTTTAATATACAAGATTGAGCTAAAACCACAGCACATGCAACTGCTCACCGCTAACCGCTAATAAAAACAACGCAGTATTCTTTCACACTACAGAACAGACACGTGCTGATAATTACACCTTCACGTTCACCTCACCGGGACTTACCAGGCTTCTCTCGCCGTTTATTACGACAGCTGTCCTCCATTTTGTGTCACGGAAAAGTCGTACGATGAACAGAACGAAGAGATTTGCTTTAGTTTAAAGATTGATACACACAGctagcacatttttatttttatttttatttattttgtgtttctgtatttatacAGTGAGATCAGATTCTAATGAAataatcttctctctctcctgtagaTGGCGCTGCTGCAACAAGTCAAAAGCTACACAATATAGCTAGCAAGAGTTATCATCATCCTCACTTCGCTAACATTAACACAATGTGAGTGATGATAAACTGAACAGATCGTGGATCTGTAATAAagcatgaataattaatgaacCACTAAATCCATTAGATCCTGATGGAAACCATTAGGATTATTAATTCTCATTAGGAAGCGGAACAGCAGCACTGTTTTATAGCTTCAGCTCTCTCCTGTATCTCCATTAGCGCAATGTGTACAGAGAGATAGCATATCAATAGCTAAACTAACAATTAAGCTAGCTAGCGTTAGAACTGGGATTGAAATTTAGACAAAATTAGGAAGTGTTTGTGAACGAGGAGAACGAGATAATGggttaaagagagaaaacagctAGCATGGTGGCTTGTATTAGCGGGTTAAAATCCTAATAAATGATGAAACGTGTTTATGCAGAAGAACCGAATGCGCTTTGCTGTAAcgagaaaacaaaacatggagGTGCTCCGGCTTACAGCTGTTGTTTGTGCTGCTTtgtgctgacacacacacacacacacacacacacacagtaaagatGAGTGATGGGTGATACGGTTATTTTCTCCTGCATATAATAGCATGTGCTGAAAAATGCATCCTGACTCATCTTTAAATGAGCCACAGGAGCAGTGACGTCACGGCAACGGCGTAAATGATCATAAAAAACATTATCAGCACGTGTCTGTAACCGAAtttaaatagataataaatagcACACGTTTGCAAACAGTCCTACAGCGTCACGCTGCTGTGTAATAACCACAGAACGCGGACTAAGGCTTAGGTTTCATCCCTAAACACAGCGCCAGTTCGTTCTTCTGGATCTTTCCATCTTTATTCACGTCACAGTGGCGCAGCAGCACGACTCTGAACTGGTCCAGCTCCGGGCCCGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU737 True 1439 lncRNA 0.40 2 681106 682564

Neighbor

gene id symbol gene type direction distance location
LOC117597201 NA coding downstream 3306 677401 ~ 677800 (-)
colec10 LOC108269102 coding downstream 128319 542668 ~ 552787 (-)
mal2 mal2,LOC107683116,LOC107757438 coding downstream 140527 530944 ~ 540579 (-)
LOC113526714 LOC108269094 coding downstream 157331 519570 ~ 523775 (-)
rps9 rps9,LOC107587787 coding downstream 347175 330438 ~ 333931 (-)
sh3d21 sh3d21 coding upstream 131971 814535 ~ 830355 (-)
thrap3a LOC108269500 coding upstream 148982 831546 ~ 851217 (-)
map7d1a map7d1 coding upstream 193981 876545 ~ 918712 (-)
si:ch211-1i11.3 LOC108271733,LOC108268173,LOC108433596 coding upstream 244160 926724 ~ 947562 (-)
cited4b LOC108269595 coding upstream 294085 976649 ~ 980262 (-)
G515 NA non-coding downstream 16174 662763 ~ 664932 (-)
G532 NA non-coding downstream 23088 657581 ~ 658018 (-)
G504 NA non-coding downstream 67316 613158 ~ 613790 (-)
G481 NA non-coding downstream 171942 508755 ~ 509164 (-)
G469 NA non-coding downstream 215362 465114 ~ 465744 (-)
G555 NA non-coding upstream 40187 722751 ~ 723107 (-)
G553 NA non-coding upstream 40987 723551 ~ 723822 (-)
G568 NA non-coding upstream 95346 777910 ~ 781495 (-)
G570 NA non-coding upstream 106048 788612 ~ 788813 (-)
G632 NA non-coding upstream 301920 984484 ~ 1027271 (-)
G502 NA other downstream 81940 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 494259 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 515037 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 625953 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 659823 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 1706084 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 1758282 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 2235659 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 2561271 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 2975616 3658180 ~ 3659319 (-)

Expression


Co-expression Network