G481


Basic Information

Item Value
gene id G481
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 508755 ~ 509164 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU672
CCCACCTTTAGCATGTTGGCACTGTGTGGGTTTAGCATCCTTTATGCTGAGATTCCTGTGTGACACACCCGAGCCtcctacaccctacatagtgcaccagatgtgcatttatattcactatacatgtatgtatgctACATAGGGTATGAACACGATGGTTCCTATAAAGTGGACTATGTTCTTCATCCTTCTGTTTCCTTCTTTAAACTCAAAGTTGTAAGTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU672 True 225 lncRNA 0.45 2 508755 509164

Neighbor

gene id symbol gene type direction distance location
rps9 rps9,LOC107587787 coding downstream 174824 330438 ~ 333931 (-)
wnt4b LOC108263562,LOC108443656,LOC103021666,LOC105901609,LOC107704912,LOC107552850,LOC106576564 coding downstream 299518 198652 ~ 209237 (-)
chd4b chd4,LOC107704911,LOC107671917,LOC107724784,LOC107714608 coding downstream 313178 166197 ~ 195577 (-)
malsu1 malsu1 coding downstream 384985 119190 ~ 123770 (-)
clk2b LOC108436103 coding downstream 390759 107623 ~ 117996 (-)
LOC113526714 LOC108269094 coding upstream 10406 519570 ~ 523775 (-)
mal2 mal2,LOC107683116,LOC107757438 coding upstream 21780 530944 ~ 540579 (-)
colec10 LOC108269102 coding upstream 33504 542668 ~ 552787 (-)
LOC117597201 NA coding upstream 168237 677401 ~ 677800 (-)
sh3d21 sh3d21 coding upstream 305371 814535 ~ 830355 (-)
G469 NA non-coding downstream 43011 465114 ~ 465744 (-)
LOC113526720 NA non-coding downstream 53731 428423 ~ 455024 (-)
G436 NA non-coding downstream 64014 441810 ~ 444741 (-)
G200 NA non-coding downstream 172523 335861 ~ 336232 (-)
G191 NA non-coding downstream 178611 329836 ~ 330144 (-)
G504 NA non-coding upstream 103994 613158 ~ 613790 (-)
G532 NA non-coding upstream 148417 657581 ~ 658018 (-)
G515 NA non-coding upstream 153599 662763 ~ 664932 (-)
G540 NA non-coding upstream 171942 681106 ~ 682564 (-)
G555 NA non-coding upstream 213587 722751 ~ 723107 (-)
spag1b LOC108262752 other downstream 321908 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 342686 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 453602 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 487472 7370 ~ 21283 (-)
G502 NA other upstream 89617 598781 ~ 599166 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 1879484 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 1931682 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 2409059 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 2734671 3243835 ~ 3281162 (-)

Expression


Co-expression Network