mal2 (mal2,LOC107683116,LOC107757438)


Basic Information

Item Value
gene id mal2
gene name mal2,LOC107683116,LOC107757438
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 530944 ~ 540579 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914015.2
CAGATgagagaacacggagaacatgAAGAACATGAAGCACATGAAGCACAGAGAAGGACAATGAGCTTCTCCTGAATAATTAAACATGGGCAGAGctgtgaaagaaaagagagacagacggcAGAGCAGAACGATGGCAGAAGCGACGAACCCGGCGGCCACCTCGTTCCCGGCTCCCACCATCTCCCTGCCGCTGGGGCTGGACATCATCCGGACCTACTCCGGAGCGCTGATCTGCATGGAGattCTCTTCGGGGGTTTGGTTTGGATTCTCGTGGCCTCCTCGAATGTTCCTGTGCCACTGATCCAGGGCTGGGTCATGTTCGTGTCTGTCACTGCGTTCTGCTGCTCCTCGGTCTACCTCGCCCTCTTCCTGCTCGGCCTCGCAGACCGAATCAACACCGACTGGAACTTCATGGATATGATGTACCACTTCGTTGCCCTGCTCTTCTATTTCTCTGCGTTTGTGCTGGAGGCTGCGATGACGTCCGGGGCGTATAAGCAGCACGTGAACAGCACAGCGTGTGTCCTCAGACCCAGCACTAACATCATCACCTTCCTGGATTTCAGACAGTACAGTATTAATGTAGCGGCTACGataTTTGCCTTCGTGGTGACCGTGTGCTACGGCTGCAGCATGTTCATGGGCTTTAAGCGATGGAGGAAGTGACGATGAGACGCCACCATCACAGCGACGCTCCCTGATCACACGTTTACTCCAAGTGTGTTATCGTTatccacaacacacaacacacacacacacacacacacacacacacacacacatgtgaggaTTCTGGTCATTTAACATGGAAGTGTGTTTTTAGCCTCGCTGGATTTAACTACATGAACATATTttagttctgtaaagctgagaTTTGTTCGATGTTACATCGGGAAACATTTCTATCACAAGTATTACATAATCTGCAGAAAAGCTCGATGGTGAAATGTGCGGTTCGTGTACGGctatgtgcaaaagtttgcaccccttCATGATTTCTGGACCAAAAAACATAAACTGTACAtctagtttatattttatctacaaaacaaaaagcatataatttaaaaatggaattCAGGTGCATCCTGAAAGACAAGACaagaatgtaaaataattaacagaatctttttattattattattattattattattattattattattatttctttccatTTATATCATCTTTAAAAGGGGTGTGTAAATTTTTGAAgtgatatttgaattttttacGATTAATATCTAAACATATGCCACTtgcatttttgttacttgtgataatgaagaaACTAAATGTTATCTCgctataaattacatttctttatctTCTTCGTTTTGTGCTAAGGgcgtgcaaacttttgcactcacaCCCTAGAGAATatttcaattatatatatatattttagataatTTCACTCTGGCTGTCCTGTCTACATTTCTAAATCGAATCGAATCTGTCTGTTCACTACTAACTCgttattttattgttgtctGAATAAACAAGCgtttttaaagaa

Function

symbol description
mal2 Predicted to be a structural constituent of myelin sheath. Predicted to be involved in myelination. Predicted to act upstream of or within transcytosis. Predicted to be located in membrane raft. Predicted to be integral component of membrane. Orthologous to human MAL2 (mal, T cell differentiation protein 2).

NR:

description
protein MAL2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914015.2 True 1526 mRNA 0.42 5 530944 540579

Neighbor

gene id symbol gene type direction distance location
LOC113526714 LOC108269094 coding downstream 7169 519570 ~ 523775 (-)
rps9 rps9,LOC107587787 coding downstream 197013 330438 ~ 333931 (-)
wnt4b LOC108263562,LOC108443656,LOC103021666,LOC105901609,LOC107704912,LOC107552850,LOC106576564 coding downstream 321707 198652 ~ 209237 (-)
chd4b chd4,LOC107704911,LOC107671917,LOC107724784,LOC107714608 coding downstream 335367 166197 ~ 195577 (-)
malsu1 malsu1 coding downstream 407174 119190 ~ 123770 (-)
colec10 LOC108269102 coding upstream 2089 542668 ~ 552787 (-)
LOC117597201 NA coding upstream 136822 677401 ~ 677800 (-)
sh3d21 sh3d21 coding upstream 273956 814535 ~ 830355 (-)
thrap3a LOC108269500 coding upstream 290967 831546 ~ 851217 (-)
map7d1a map7d1 coding upstream 335966 876545 ~ 918712 (-)
G481 NA non-coding downstream 21780 508755 ~ 509164 (-)
G469 NA non-coding downstream 65200 465114 ~ 465744 (-)
LOC113526720 NA non-coding downstream 75920 428423 ~ 455024 (-)
G436 NA non-coding downstream 86203 441810 ~ 444741 (-)
G200 NA non-coding downstream 194712 335861 ~ 336232 (-)
G504 NA non-coding upstream 72579 613158 ~ 613790 (-)
G532 NA non-coding upstream 117002 657581 ~ 658018 (-)
G515 NA non-coding upstream 122184 662763 ~ 664932 (-)
G540 NA non-coding upstream 140527 681106 ~ 682564 (-)
G555 NA non-coding upstream 182172 722751 ~ 723107 (-)
spag1b LOC108262752 other downstream 344097 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 364875 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 475791 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 509661 7370 ~ 21283 (-)
G502 NA other upstream 58202 598781 ~ 599166 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 1848069 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 1900267 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 2377644 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 2703256 3243835 ~ 3281162 (-)

Expression


Co-expression Network