wnt4b (LOC108263562,LOC108443656,LOC103021666,LOC105901609,LOC107704912,LOC107552850,LOC106576564)


Basic Information

Item Value
gene id wnt4b
gene name LOC108263562,LOC108443656,LOC103021666,LOC105901609,LOC107704912,LOC107552850,LOC106576564
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 198652 ~ 209237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306088.1
tttgtcctcCAGGTTCAATATTTGTGGTCCCCTCTTGTCTAAATGTCATCCCTTCTTCCGAGACAATACGGAGGGGTGAAGGACGACAGAATGGAGGGAGTGTGGGAGGAAGGGAGTGACGGAGGGGGCACACTCGTAAAGAACAGCAACAAAGTTTGGGAAAATTAAACAAGAGGTAAAGGGGACAGGGGCAtgtccactctctctctctgtctctgtctctctcactcattgtATTTATCCCTCCGTTTATTTATCACTCGCTTCTCTCAGTTTTACGCAAAAGACTTTTTTTGTAAGAGGTATAAAGGGGTGACATTTTCTGACGCAGACTTCACAGACGCtaggtaacacacacacgtcatgaGTATTCGAATAGGAAACTCctacattttctctctctctctctctctctctctctcacacacacacacacacacacacacacactcactggtgCTTAAGTTAAGAATAGTGGTGAGCACTACAGCAGTCACGCaattaatattgtgtgtgtgtgtttgtgtgtgtgtgtttcagcgttTAAATGAAAGCATGATTTGGTTAGTTTGAGTTTGCAATTCATTTGATTCACTCAAAAGAGTCATTTAAGAGAACGAGTCATTCctgattcattcatcatttaccaatatttatgaaagacaacacacacacacacacacacacacacacacagtgtgttcagTGCTAACAGTGATAATGAGGCTgagctcatctctctctctctctctctctctctctctctttctctttataaCCCCTGTCCCACCTCCTTTATCTCCACTCGTCCCCTCGCACTCGTCCGGTTCGTCCTTCTCTAGAGGAATACACCTTTTCGGTTTGTTTTGGGGAAAGGACTCACTTGCTCTTGCTCTGCACAGGGATTTTAATTAGGACTATAATTGACCTTCAATTATGACTTTATTTGgactttaattaatattttaattacaactttaaataaattaatgcagTTAGTCCGGGTAAagactaatgttttttttaacagattattGGGATAAAGTAGGATAAAGTGAAAGAGTCAGaagtgttaataataaaacattactttaataataataataattacagtaatttattCCTACTTCAGTAAGATGAGTGGACGTAAACCCGAGTGTAGATCACTGGAGCGCTTTTAATTATCATCCtgttggatttatttttatttttgttattattattggatGGTTGCCGTGGTGCTCTGGACAGAGATGAGGGGAAAATCCCCAACACTGCACccgagagagtgagacagacggacagacagacggacagacagacagacagacagacacatataGACTGActaaacagacagaaatacaggaAGATCCAAAgaaaatagatagacagataaacagataggtagacagacagatagatggaatTATAGATAGATGGACAAACAATTACATGCATATACAGACTGATAGATTAAtatataaagacagacagatagacagacagacagacagatagatagatagatagatagatagatagatagatagataagcagACAGTTAGAGGGACAGACGGAGGGATAGACAGTCTGATGCCCACTGCCTCTTCTGTCAATCACACGGGACGACGCCTCCTGCTGTTGCTATGGGCAACCCACCTCACCATGGCAACCAACTGGCTTTCTCTGGTGCGTGTGCCGCGCTCTCGGCCGGTGTCTGGTTCAGGGGTGTGTGTCCGTCTGCGGGGTCTGTCAGTGGGGCAGGTGGGAGTGTGCAGGACGCGAGGGGAAGTGATGGAGTCCGTACGCAGAGCGGCTGAGATGGTCATCGACGAGtgtcagCATCAGTTCCGTAATCGGAGGTGGAACTGCTCCACTACTCCTCGTGGTGTTAACGTGTTCGGCCGTGTTATGAATCAAGggaCGCGGGAGGCGGCGTTTGTCCACGCcctctcctctgctgctgtagctgttGCAGTGACACGAGGCTGCAGCCGGGGGGAGCTGGAGAGGTGCGGCTGTGACCGCAAGGTCCGGGGAGTCAGTCCTGAggggtTTCAGTGGTCGGGGTGTTCAGATAATCTGTCGTACGGTGTTGCGTTCTCTCAGACGTTCGTTGATGAGCCGGAGCGAGCGAAGGGCACGGCATCGGCGCGACCGCTAATGAACATCCACAATAACGAAGCAGGACGGAAGgTTATCCTCCACAACATGCAGGTGGAGTGTAAGTGTCACGGTGTTTCGGGTTCCTGTGAGCTCAAAACCTGCTGGAAGGTGATGCCTCCGTTCCGCAGAGTCGGCGCTGTACTGAAGGAGCGATTTGACGGAGCCACAGAGGTGCGTCTGACGCGTATCGGTTCTCGCGCCGCTCTGCTGCCGAAGGACCCTGACGTGAAGCCGCCTGCCGCACGAGATCTCGTCTACTTGGCCGCTTCTCCTGATTTCTGTCGCCTGGACCCTGAGAACGGCATTCTGGGAACCGCTGGCCGCCGCTGCAACgGGACATCACGCTTAGCCCCGGACAGCTGTGAGCTGCTGTGCTGTGGTCCGGGTTTCCGCTCGGGTCGAGCCGAAGTGGTTCAGCGCTGCTCCTGTAAATTCTCGTGGTGCTGCTCGGTCCGGTGTCAGCAATGCAGGAACACAGTGCTCATACACACCTGCaaagagtgacacacacacacacacacacagttggaaCACACTACACGCATGCTGACTAgcttagcacacacacacatgtagttTATCATTAAAGTGCAGCCTGGGAatgactcactcacacactgagcCTCGTTCATCAACCTGgatataaacaaatttattctttcataaatcattcacaggagcatttTCACATGAACTGTGGCATTTGAATTGCGTAAATTTGCGtttaaggagactcactaatgcaAACCCCGAGTGCTGATGAGTTACTGGTTATATATTCACATCACACTGCCAAGTTTAAATCACTGGATTGAAATCGATTCTAAAACAAAtccatgcatttttttattttggatttttcccgagacacatgaagccaactgcatcttatcaaactgctgttcatgctgcacACTCACAGGAAAGCGCTATcctccctcttctgcatacacgagctcacagagacccacgattggctagtgtctctgtgattgactcCCGCCCACAGGTGATAGGGCGAACCCGTTTCTGTGCCACTCAGGAGTCCACAGAGCCGTCACACAGGAAAAAACTCATCATTCaatcaggacaaaagtaatggcaccctataaaaggaggaggagttggTGCGAGACTGTGGTAGTCGACACGCTGCAAatgctgagctgcattattggaagatttagcgcatGCCACgcttaggaggcgctctttcaccgATTAGTCGTCAGTTTGttgctctctgtgagctttagagatttgtgggcgtggctaaatgtcaATCACCTGTGCCATGAACGTTTATGGTAGTGACTGGTGTTTATCAGCAAACTTTTgccatgaaaacatttacacacacatttactaaacgagtgataaatgaggctcGGGAAATTTTAATTCCAGCTGccagatgatgatgacgatgatgatgatgatgatgatgatgtcatattGGGTGTTACTGCAtccgaccaatcagcagctttgcTTCAATTCACATTCAGTCTAAAATCTCTTATTATACAATACATTAACATGTAAGTATGAAAATTATAATAGATGGGGTTAAAACCTgaactgtgacacacacacacacacacacacacacacacacacagactaactGGATGAGACAAAGCTTTAAGGTGGAGATTAaccctgtaacacacagctGTAGTATGGAAGAGTGTAATAAATGTAGAGTAGAGCACGTGGTGTGTTTGTAATATTCAGCGTTACTGATTATAATCTCATATTTATTCCAGACTCATCACTCTGTACATCACGCTGCTGTAAACACATAAACATGTTTCACTGCACACaacttaataaacataataaactcaTCACCATGGTTA

Function

NR:

description
PREDICTED: protein Wnt-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306088.1 True 4032 mRNA 0.46 9 198652 209237

Neighbor

gene id symbol gene type direction distance location
chd4b chd4,LOC107704911,LOC107671917,LOC107724784,LOC107714608 coding downstream 3075 166197 ~ 195577 (-)
malsu1 malsu1 coding downstream 74882 119190 ~ 123770 (-)
clk2b LOC108436103 coding downstream 80656 107623 ~ 117996 (-)
LOC113525476 NA coding downstream 92124 104883 ~ 106528 (-)
LOC113525473 LOC108263488 coding downstream 94304 95532 ~ 104348 (-)
rps9 rps9,LOC107587787 coding upstream 121201 330438 ~ 333931 (-)
LOC113526714 LOC108269094 coding upstream 310333 519570 ~ 523775 (-)
mal2 mal2,LOC107683116,LOC107757438 coding upstream 321707 530944 ~ 540579 (-)
colec10 LOC108269102 coding upstream 333431 542668 ~ 552787 (-)
LOC117597201 NA coding upstream 468164 677401 ~ 677800 (-)
G21 NA non-coding downstream 184612 13277 ~ 14040 (-)
G187 phc1,LOC108270321,LOC108443659 non-coding upstream 4057 213294 ~ 214675 (-)
LOC117597821 NA non-coding upstream 37895 247132 ~ 248138 (-)
LOC117597824 LOC108270753,LOC108261633,LOC108263117,LOC108260129 non-coding upstream 39029 248266 ~ 252164 (-)
G190 NA non-coding upstream 81600 290837 ~ 295782 (-)
LOC117598405 NA non-coding upstream 101227 310464 ~ 329128 (-)
spag1b LOC108262752 other downstream 11805 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 32583 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 143499 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 177369 7370 ~ 21283 (-)
G502 NA other upstream 389544 598781 ~ 599166 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 2179411 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 2231609 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 2708986 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 3034598 3243835 ~ 3281162 (-)

Expression


Co-expression Network