LOC117597821


Basic Information

Item Value
gene id LOC117597821
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 247132 ~ 248138 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578583.1
ctgtacactggagatactgagcTTGTCTTcctgcagtattacagatgaaggttgtgctgctctggcttcagctctgaggtcaaactcctcatcacacctgagagaactgaacctgaacAACAATAATCCAGGAGagtcaggagtgaagctgctctctgatctactgaaggatccacactgtacactggagacactacaCATTACGAGCTGAATCATTCACATTCAGATGTAGAAGTTCCACAACAATCACCGTGACTGATCACATCCTTTATCCACTCAGCTCACGTCACTTCAGACtggaataatatattttatcatgCAAAGTCcttcactatttacacacaacacaataacatCTTTTctactgcattttaaatgataatgtaaacatgtaaaactgCAACACGCTTCGACTATTAAagttatttacataattttaaaagcagaattaaattaattcttgtacatttactgtatgtaaacCTGTTATTCCATACAATTATGTATATATGCTGATATATTTATCTACAGTATGTGTAATACAAAATAAACGGTGACTGGGAACACACAa

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578583.1 True 571 lncRNA 0.37 3 247132 248138

Neighbor

gene id symbol gene type direction distance location
wnt4b LOC108263562,LOC108443656,LOC103021666,LOC105901609,LOC107704912,LOC107552850,LOC106576564 coding downstream 37895 198652 ~ 209237 (-)
chd4b chd4,LOC107704911,LOC107671917,LOC107724784,LOC107714608 coding downstream 51555 166197 ~ 195577 (-)
malsu1 malsu1 coding downstream 123362 119190 ~ 123770 (-)
clk2b LOC108436103 coding downstream 129136 107623 ~ 117996 (-)
LOC113525476 NA coding downstream 140604 104883 ~ 106528 (-)
rps9 rps9,LOC107587787 coding upstream 82300 330438 ~ 333931 (-)
LOC113526714 LOC108269094 coding upstream 271432 519570 ~ 523775 (-)
mal2 mal2,LOC107683116,LOC107757438 coding upstream 282806 530944 ~ 540579 (-)
colec10 LOC108269102 coding upstream 294530 542668 ~ 552787 (-)
LOC117597201 NA coding upstream 429263 677401 ~ 677800 (-)
G187 phc1,LOC108270321,LOC108443659 non-coding downstream 32457 213294 ~ 214675 (-)
G21 NA non-coding downstream 233092 13277 ~ 14040 (-)
LOC117597824 LOC108270753,LOC108261633,LOC108263117,LOC108260129 non-coding upstream 128 248266 ~ 252164 (-)
G190 NA non-coding upstream 42699 290837 ~ 295782 (-)
LOC117598405 NA non-coding upstream 62326 310464 ~ 329128 (-)
G191 NA non-coding upstream 81698 329836 ~ 330144 (-)
G200 NA non-coding upstream 87723 335861 ~ 336232 (-)
spag1b LOC108262752 other downstream 60285 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 81063 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 191979 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 225849 7370 ~ 21283 (-)
G502 NA other upstream 350643 598781 ~ 599166 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 2140510 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 2192708 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 2670085 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 2995697 3243835 ~ 3281162 (-)

Expression


Co-expression Network