LOC113526720


Basic Information

Item Value
gene id LOC113526720
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 428423 ~ 455024 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU602
AGGGAGGAGGTGACATGTGCCAGTAAAAGCGAGAGAAGTGAAACAGGgaagtggaaaagtggaaaaagtaTTTGCTAAAGACGAAAGACTACGAATGGAAAGAAAGGTGAAAAGATAAACGGACCTGTAAGCAGGTCAGGATCACGGAACCTGAAGGGAATATTGGAGACATGAAGGCGTTTGGGTTGGGCTTTCCCAGACCCCTCCTCCTCGCTGCCGCTTCCTGCTCCGCCCCCTGTCGCCACGGGGACGTTCAGGGACTGGGGGTCGGAGGTCACGGGGGCCAGACCTTCATCCTGAGCGACGGACAacgcgacagagagagagaagattaaAGTAAAGACTGTGGAGTGGTGTAAAGGTACACTAGGCAGAATATTCTTTTACAAAAAGCCATGTCCCAAACAGTAGCTAAGCAAGTGCAATGCTAACTAGTCATTAATACGAGAGCCAAAATGGCGGCTGTTGGAGTTACAGCTACACTGAGTGCTAGCATTTGGGGTGGAGCCTAAATATAACAAGTCATGTGACCAGTAGTAAGCCAGTCATATGCAGTATAGCACTTAGCGTacttttttataaattcagttcatttcagaAATTTACAGCACGCTGTCATTTTCATGGAggatcaaaacaaaacaaaatgaatgtaaaataaagaggaaataaagtgaacacagaagcATATGAGC
>XR_003402802.2
TGTTATCTCTACAGGTTTCCCTCAGATCCTTAACCTCCACTGATATCCTGTGAATGAGCCTTAATCTCTCAGGTTCCTTTAATCGAAAGCCTCAATCTGTGTAAATTTTTTCTGAGCGTGTGCATCACATTAGCATGATTTAATGATTACGGTGATGTTATCAGCTTTAAATGTGTAGAGACTGGATTAGATAACGTGTAGCGGCAGTAAGCCTGGGCGTGGTGTTGGGGAAAACTAAATGGAAAGTATGAATGTAAACagcaagtgagtgagagagagagagagagagagagagagattgcaagAATGTGAGTTTAAGTTTAAGAGGACTTTAAGTTTTAAAGACTTTaatcactacactacacataccTCATTATTAAACTCAGCTCATTGCAAAGTTTAAGCCTTAAAGCAAGATATCCCAGAATCCCAGAATTAGATCTGGATCAGAAAAACTGGGCTAAAAACCAAACAGCCAGGATTTTTAGATCATTGTGGACAGAAACACCTTAAAATATTGGCAACACTTCAATCAAGTTGAAGCACGTTCAATAAAATATGAAGGTCTTCTGGATAAATAAGtgaaatgacattaaaatcTCACCATCTCATCAGTTTAAGCATTAAATATATTCAGGTAAAAAAGTTCTGTTTTTCAGAATAAAGTGACTCTGAGCTGGAATGGAGCGCAGGCTGTGTAGGCAGATGTTAtaggtaattaaaaaaatgaaacgcACTCTCGTGTTTTACTGGCATGACGATAAAATCACATGAATAAGATGTGAGAGGGAGAAGGGACAGAGGGAGGAGGTGACATGTGCCAGTAAAAGCGAGAGAAGTGAAACAGGgaagtggaaaagtggaaaaagtaTTTGCTAAAGACGAAAGACTACGAATGGAAAGAAAGGTGAAAAGATAAACGGACCTGTAAGCAGGTCAGGATCACGGAACCTGAAGGGAATATTGGAGACATGAAGGCGTTTGGGTTGGGCTTTCCCAGACCCCTCCTCCTCGCTGCCGCTTCCTGCTCCGCCCCCTGTCGCCACGGGGACGTTCAGGGACTGGGGGTCGGAGGTCACGGGGGCCAGACCTTCATCCTGAGCGACGGACAacgcgacagagagagagaagattaaAGTAAAGACTGTGGAGTGGTGTAAAGgagtgtgtatggtgtgtggaGTGGGATAACTCGCTCCGTTacacgtgtgtgtttgttgtgagTATTTAACAGCATACTGTTGGACAAATCactatttttttcacaaaatgtctataaaatattatatacaataaatcACAAGACTGTTAGTGGCACactcattagtgtgtgtgtgtgtgtatgtgtg
>XR_004579563.1
GTGTGTTATCTCTACAGGTTTCCCTCAGATCCTTAACCTCCACTGATATCCTGTGAATGAGCCTTAATCTCTCAGGTTCCTTTAATCGAAAGCCTCAATCTGTGTAAATTTTTTCTGAGCGTGTGCATCACATTAGCATGATTTAATGATTACGGTGATGTTATCAGCTTTAAATGTGTAGAGACTGGATTAGATAACGTGTAGCGGCAGTAAGCCTGGGCGTGGTGTTGGGGAAAACTAAATGGAAAGTATGAATGTAAACagcaagtgagtgagagagagagagagagagagagagagattgcaagAATGTGAGTTTAAGTTTAAGAGGACTTTAAGTTTTAAAGACTTTaatcactacactacacataccTCATTATTAAACTCAGCTCATTGCAAAGTTTAAGCCTTAAAGCAAGATATCCCAGAATCCCAGAATTAGATCTGGATCAGAAAAACTGGGCTAAAAACCAAACAGCCAGGATTTTTAGATCATTGTGGACAGAAACACCTTAAAATATTGGCAACACTTCAATCAAGTTGAAGCACGTTCAATAAAATATGAAGGTCTTCTGGATAAATAAGtgaaatgacattaaaatcTCACCATCTCATCAGTTTAAGCATTAAATATATTCAGGTAAAAAAGTTCTGTTTTTCAGAATAAAGTGACTCTGAGCTGGAATGGAGCGCAGGCTGTGTAGGCAGATGTTAtaggtaattaaaaaaatgaaacgcACTCTCGTGTTTTACTGGCATGACGATAAAATCACATGAATAAGATGTGAGAGGGAGAAGGGACAGAGGGAGGAGGTGACATGTGCCAGTAAAAGCGAGAGAAGTGAAACAGGgaagtggaaaagtggaaaaagtaTTTGCTAAAGACGAAAGACTACGAATGGAAAGAAAGGTGAAAAGATAAACGGACCTGTAAGCAGGTCAGGATCACGGAACCTGAAGGGAATATTGGAGACATGAAGGCGTTTGGGTTGGGCTTTCCCAGACCCCTCCTCCTCGCTGCCGCTTCCTGCTCCGCCCCCTGTCGCCACGGGGACGTTCAGGGACTGGGGGTCGGAGGTCACGGGGGCCAGACCTTCATCCTGAGCGACGGACAacgcgacagagagagagaagattaaAGTAAAGACTGTGGAGTGGTGTAAAGgagtgtgtatggtgtgtggaGTGGGATAACTCGCTCCGTTacacgtgtgtgtttgttcaggAAAGCTGAACAGAGGCATCTGAGCAAGTTAAAATACTACAAAACAGCAGGAAGCACAAAAAAGCAGTAGCGTTCGTTTACTGGAGCTCAGTCTGATAAAgccttcatcatttcatcactcCATTTCATACTCATCCTCACCATCATCACATCATACTGATGATcttatttacaccacagctggtcagaaggtgttgattaattctctagaacagcagctctgacagtagtataggtttatattaatgcactcgttct
>XR_004579565.1
GTGTGTTATCTCTACAGGTTTCCCTCAGATCCTTAACCTCCACTGATATCCTGTGAATGAGCCTTAATCTCTCAGGTTCCTTTAATCGAAAGCCTCAATCTGTGTAAATTTTTTCTGAGCGTGTGCATCACATTAGCATGATTTAATGATTACGGTGATGTTATCAGCTTTAAATGTGTAGAGACTGGATTAGATAACGTGTAGCGGCAGTAAGCCTGGGCGTGGTGTTGGGGAAAACTAAATGGAAAGTATGAATGTAAACagcaagtgagtgagagagagagagagagagagagagagattgcaagAATGTGAGTTTAAGTTTAAGAGGACTTTAAGTTTTAAAGACTTTaatcactacactacacataccTCATTATTAAACTCAGCTCATTGCAAAGTTTAAGCCTTAAAGCAAGATATCCCAGAATCCCAGAATTAGATCTGGATCAGAAAAACTGGGCTAAAAACCAAACAGCCAGGATTTTTAGATCATTGTGGACAGAAACACCTTAAAATATTGGCAACACTTCAATCAAGTTGAAGCACGTTCAATAAAATATGAAGGTCTTCTGGATAAATAAGtgaaatgacattaaaatcTCACCATCTCATCAGTTTAAGCATTAAATATATTCAGGTAAAAAAGTTCTGTTTTTCAGAATAAAGTGACTCTGAGCTGGAATGGAGCGCAGGCTGTGTAGGCAGATGTTAtaggtaattaaaaaaatgaaacgcACTCTCGTGTTTTACTGGCATGACGATAAAATCACATGAATAAGATGTGAGAGGGAGAAGGGACAGAGGGAGGAGGTGACATGTGCCAGTAAAAGCGAGAGAAGTGAAACAGGgaagtggaaaagtggaaaaagtaTTTGCTAAAGACGAAAGACTACGAATGGAAAGAAAGGTGAAAAGATAAACGGACCTGTAAGCAGGTCAGGATCACGGAACCTGAAGGGAATATTGGAGACATGAAGGCGTTTGGGTTGGGCTTTCCCAGACCCCTCCTCCTCGCTGCCGCTTCCTGCTCCGCCCCCTGTCGCCACGGGGACGTTCAGGGACTGGGGGTCGGAGGTCACGGGGGCCAGACCTTCATCCTGAGCGACGGACAacgcgacagagagagagaagattaaAGTAAAGACTGTGGAGTGGTGTAAAGgagtgtgtatggtgtgtggaGTGGGATAACTCGCTCCGTTacacgtgtgtgtttgttgAAAGCTGAACAGAGGCATCTGAGCAAGTTAAAATACTACAAAACAGCAGGAAGCACAAAAAAGCAGTAGCGTTCGTTTACTGGAGCTCAGTCTGATAAAgccttcatcatttcatcactcCATTTCATACTCATCCTCACCATCATCACATCATACTGATGATcttatttacaccacagctggtcagaaggtgttgattaattctctagaacagcagctctgacagtagtataggtttatattaatgcactcgttct

Function

GO:

id name namespace
GO:0048738 cardiac muscle tissue development biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU602 False 695 lncRNA 0.40 2 437530 454220
XR_003402802.2 False 1349 lncRNA 0.41 3 428715 455021
XR_004579563.1 True 1483 lncRNA 0.42 4 428423 455024
XR_004579565.1 False 1480 lncRNA 0.42 4 428423 455024

Neighbor

gene id symbol gene type direction distance location
rps9 rps9,LOC107587787 coding downstream 94492 330438 ~ 333931 (-)
wnt4b LOC108263562,LOC108443656,LOC103021666,LOC105901609,LOC107704912,LOC107552850,LOC106576564 coding downstream 219186 198652 ~ 209237 (-)
chd4b chd4,LOC107704911,LOC107671917,LOC107724784,LOC107714608 coding downstream 232846 166197 ~ 195577 (-)
malsu1 malsu1 coding downstream 304653 119190 ~ 123770 (-)
clk2b LOC108436103 coding downstream 310427 107623 ~ 117996 (-)
LOC113526714 LOC108269094 coding upstream 64546 519570 ~ 523775 (-)
mal2 mal2,LOC107683116,LOC107757438 coding upstream 75920 530944 ~ 540579 (-)
colec10 LOC108269102 coding upstream 87644 542668 ~ 552787 (-)
LOC117597201 NA coding upstream 222377 677401 ~ 677800 (-)
sh3d21 sh3d21 coding upstream 359511 814535 ~ 830355 (-)
G200 NA non-coding downstream 92191 335861 ~ 336232 (-)
G191 NA non-coding downstream 98279 329836 ~ 330144 (-)
LOC117598405 NA non-coding downstream 99295 310464 ~ 329128 (-)
G190 NA non-coding downstream 132641 290837 ~ 295782 (-)
LOC117597824 LOC108270753,LOC108261633,LOC108263117,LOC108260129 non-coding downstream 176259 248266 ~ 252164 (-)
G469 NA non-coding upstream 10090 465114 ~ 465744 (-)
G481 NA non-coding upstream 53731 508755 ~ 509164 (-)
G504 NA non-coding upstream 158134 613158 ~ 613790 (-)
G532 NA non-coding upstream 202557 657581 ~ 658018 (-)
G515 NA non-coding upstream 207739 662763 ~ 664932 (-)
spag1b LOC108262752 other downstream 241576 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 262354 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 373270 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 407140 7370 ~ 21283 (-)
G502 NA other upstream 143757 598781 ~ 599166 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 1933624 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 1985822 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 2463199 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 2788811 3243835 ~ 3281162 (-)

Expression


Co-expression Network