G568


Basic Information

Item Value
gene id G568
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 777910 ~ 781495 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU773
TCCATATCAAATTTATTGCTGACATGCATGTAGAGATTTTATGAAGTacaaaaatatgtcatttatacaaatttgtttttatctCTGTACAATTACCCAGTTTCTTCTTTGATATCTATCCAAACAAGCAGCTTACAACACCGAACATTTAGGCTTTTAACTAATTTCACCATCATTTCCTTTTACACCATTTTCCAGTTAGCGGACATGTTTATAAGAcaggacaagaaaaaaaaaaaaaaaaaaaataaatcatacttCTAAACAAAATTActgactttaaaataaattctccCAATTTAGCGCCACTGAGATGAAtcttctggttttttttttgttttgttttttttagtgtattctCAACTGGATTACAAAtgcaatttactttttttttttttttttaaaaaacacctaCAGCCACACCCGAATTTTCTGGCAACTTAAACGCAAAGATCATGTGGCACATCCTGCAAGTCCAAGTCATGCATTACTTAATGTATAAAACAATATAGCTCAACAACATAAAATGTGTCATGCTGCAAATACACAGCTTGGCCTTGAGATGCCAAGGGTgctacaaggaaaaaaaaagaagagaaaaaaaaaaaatgatgcagggAGCGATTCTGTTAAGACACTTACATGGGCATTTAACAACAATTATGGCCTAAGTTAAGGTACGGACTACACGACCACTCCACCAAGTCACATTTAAACCCAAGGATCTGTGGGAAGATGATGGAGCTGGGGGTCACTACACCGCCTTTCTTCAATGAATGATGGATGCAGTGAAGTTTTAATTTTAGTGGGGACCTAGCACTTACGAATGCCCCTTAACTGCGACACACAGAAGAAGTCATCTACAATACTgcaatatatttaaacaaaacaaaaaaaaaatattcacattgaAGTGGGAGCACACTAATGCTTTCAATAGTGGCAGGCAACATTACCTTGATAAATACTCCTCATGTCGATGCCTTGGTGTAACTCTGCTTGATGGCAGCCTACTAGTACAGCTACATCAGGATGGTATTTGCACACTGGCCACTGGAGTGTGTTGTATTAAACTTGCAGGATAAACTCTACATAATTCCTTAATGTTATAATGTGCTATAATTTCATTTGTCTAAAAAATAGAaaaaaaaagccttcactGGGGATTACTGGGCAAGATCACAGCAATACTTTAGAACTGGATTATGTGATGATCTCATGATACTTCACACCTTACACGGATAGAGGCAGTGTTCAAAATAATAGATGGAAGCAAGACTGTTTATacacagtgaataaataaaaatgaacacccataaaaaatgaaaaccaaGCAAAGCTGAACAGTTTTGAGTAAACGCTCACGCTTTCTGTCATGTTGCTTTGCACTTTAAAAACCGAGAGCACAAATCAAAAAGAGACAAACTACCATTGAGAAGCTCGAGGCCTACAGTACTGGATTACGTTTTCCCCCTAATGTTAGTGAATCAGGCAGGCCTTCACAAGCTAAATCACAGGATCAGAGGCTGATGCAAGACGACCACCTGTTTACTAAAATATACTAGACCAccaaaggtacaaaaaaaaaaaaaataaaaaaaaaaaatcaccacttAATGTTGAAATCTGAATCTAAGGCAAGATATTCTGTGGCAATGATTTATACAAGTAGCTTAGATTGGATCGGTGAACAGTCTGACAAGattgaaaatatttataatcatatgACTCGACAATTTCAAAATTAGGATtaggaaaacataaaaatgtgatcAATGTATCAAGAGAACCGCGCTCATAATCTTTATATACACGATGAATAAAGACAATGGCACTACAAATGGAAGATGGGGATGTTGTATATGCCCAGGCTCCTAGGTTTAGTTTTAGTGGCCATTCCCCAGCACAATGACCAGAAGGGCGGCCAAAAGGTTCGGATTAACACGGTGTGGCAGAAAAGGAGTGCTGGCTCGTTCTCAAAAGGGCAGCTCAAGATCCTGGCTGTGGTCACCGCAGGGGCGGGGAAGAGATTGAAGCCTGCACTTCCAGGGCTTAATGGAGCTTAAGCTTCCGCATGATTGCAGCCTCCGCCAGCTTCTGACAGCTTTATACCATCTCTGGTTGCTCTAAGACTTCAGGTAATGATAAGCAATCATAAGAACGAAAGCCAGAAGGCATCTCGTTTTGAATTTCGGGAATTCACGTGTACAAGACAACGCTCTATTTGGACAGaggtgttattaaaaaaaaaaaaaaaaaaagaaaagaaaaagcaaaagctTTGAGACCACTGCAGCCGACTGCACCTTTAGCTGATCAGGGGAGAATATCGTACCTCACAGGGCAGCAGGTCGCAAAGCAGCCGCTTTCGGGACTATTTTTGGCATCTAGATTTTGAGCTGTATAATGCTAGCTGCCCGTGAATGCCCAATCAAGCAAAGAAGGCCTACAGAGTCTGTGTGTTATAGTATAATTTAAGAACTGAGACAAACAAGAATAAACTAATGaaatggcaggaaaaaaaaaaagaccatgttCTTAAAATGCTACCTTTCTAACAGGAGAGGGGAGCAAAGCTTATTCagattatgaagaaaaaaaattgatcgCTGGTTTTGACATGCCAGAactcttggggaaaaaaaaaaaataataacaataataataacaataataataataataataataataataacgctCTTCACCTGTGCTTGTGGTCATATCCCCACATTTGGATACCTGTTTTTCAAAACTATTGAGAGCACAGTTCTAAacggactgagagagagagaaacagagacgtTAAGAGGTAGATTTGCAATTGTGAATGCAGATGGAGCCCAGTATGGATGGCTGTGGTGGACTGAAGGACTGAGGAACACATGGATGGGATGACAACTGAGGTCAGGTGATCTGAGCTGTTCCCCTTGGAAAGTGCTGAGAGTAGAAAAGGAGAATGAGAGGTGTGTGTTACGCGTGGTTTGTGCGCGCACCCATTTGCTACATGATTCCGTTCCGGTATTGCTGCTAATGTCTGTAtggcagagtgagagagagggagagggagagggaggggagggagGGGATATGTTAGGGGCTCAGAACCCATAAGTCTTGTGTGTTGCCCAAACCAGAGTCACCTTCTTTAACCAGTGAGAGGAGCAGATGAGAGAACCGTCCGACATGCTGCATCTCCTCACCCGAGCGCTCTTTAAAGCAACCACACGCACACGTGAATCCGGCTGTGTGACACAGCCTGTGCACAGTGATCCTCTACTTCCTGAGGAAGCGCTGGGCCAGTATGGCTGCGTCTAGAGGGCTGACAGGCTGAGCGTCGTGACCCAGGCGCCTCACCGGCGGCACGCTGCCGAACTGCCTCTTGGTCAGGAAGCTCTTGGCCTCATGGATAGTGTTCTTCTCCTCAGCTAGCAGCAGCTGCTGGCGCATGTAGTTCTCAAACTCATACTGTGACGACTCTTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU773 True 3485 lncRNA 0.41 2 777910 781495

Neighbor

gene id symbol gene type direction distance location
LOC117597201 NA coding downstream 100110 677401 ~ 677800 (-)
colec10 LOC108269102 coding downstream 225123 542668 ~ 552787 (-)
mal2 mal2,LOC107683116,LOC107757438 coding downstream 237331 530944 ~ 540579 (-)
LOC113526714 LOC108269094 coding downstream 254135 519570 ~ 523775 (-)
rps9 rps9,LOC107587787 coding downstream 443979 330438 ~ 333931 (-)
sh3d21 sh3d21 coding upstream 33040 814535 ~ 830355 (-)
thrap3a LOC108269500 coding upstream 50051 831546 ~ 851217 (-)
map7d1a map7d1 coding upstream 95050 876545 ~ 918712 (-)
si:ch211-1i11.3 LOC108271733,LOC108268173,LOC108433596 coding upstream 145229 926724 ~ 947562 (-)
cited4b LOC108269595 coding upstream 195154 976649 ~ 980262 (-)
G553 NA non-coding downstream 54088 723551 ~ 723822 (-)
G555 NA non-coding downstream 54803 722751 ~ 723107 (-)
G540 NA non-coding downstream 95346 681106 ~ 682564 (-)
G515 NA non-coding downstream 112978 662763 ~ 664932 (-)
G532 NA non-coding downstream 119892 657581 ~ 658018 (-)
G570 NA non-coding upstream 7117 788612 ~ 788813 (-)
G632 NA non-coding upstream 202989 984484 ~ 1027271 (-)
G614 NA non-coding upstream 256465 1037960 ~ 1149024 (-)
G857 pkib,LOC105417165,LOC107374466 non-coding upstream 657135 1438630 ~ 1447454 (-)
G943 NA non-coding upstream 798263 1579758 ~ 1579966 (-)
G502 NA other downstream 178744 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 591063 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 611841 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 722757 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 756627 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 1607153 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 1659351 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 2136728 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 2462340 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 2876685 3658180 ~ 3659319 (-)

Expression


Co-expression Network