rab42b (rab42)


Basic Information

Item Value
gene id rab42b
gene name rab42
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1039296 ~ 1042852 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913421.2
AGCAACAATGATAAAGCACATCAGAACAGGGAGGTTCCTCCCCTTCACCAGCTCAGCTGCTCTGCACGAGATTATTACTCAAACCTGACTCTAAGGGACATTATACACGACAGCTATGCACTTTATTCTTCTGACTGAGGATGTGTAAAGTGAAAGCTTACATTGGACCTCCAGCAGAAAGACTATCCTGCAACGTAGTACTGAGACTGGTGACTTTGTGAGTCTTGGCTGTGGAGGTCTGCTGTGATAAGTTCTTGTTAGGCCTACAGAAGTCATGGACCTGACACTGTGGCAGTATCAGTTCCGCATCATCATGCTGGGTGACTCTACGGTGGGCAAGTCATCCATGCTGAAGCGCTACACAGAGGACAAGTTCTTGGAGTGTATTAACGAGACGGTCGGAGTGGACTTCTATGTGCATTTCCTGGAGGTGGAGCCTGGTATGATGGTCAAACTCCAGTTCTGGGACACCGCTGGACAGGAGAGGTTCAGGTCAGTGACACGCTCCTACTACCGGAACTCCGTTGGAGGCCTGTTGGTGTTCGATGTGGGGAACCGTGCCTCGTTTGAGCATGTGAGGGACTGGTACGCAGAAGTGTGCGAGCATGTCATGCCTCATGCCATGATCTTCGTGCTGGTGGGCCATAAGAGCGACCGTGAGTTGGCTGGAGAGCGCGCTGTCTCCAAAGATGAGGCAGAGAAGCTGGCTGCTCAACTCGGAACAACATATGTGGAAGCCTCGGCCAAAACAGGCCAGAATATCCAAATGTGCTTTGAGGTAGTGGCACGGCGAATCTACCAGGGGCTGCAGAGTGGAGAGGTGAGGCTGAGAGAAGGCTGGGATGGAATAAAGAGCTCGGTTCTACAAGCACAACAATTGCAGAGTATCCAAGACAGTGAGCAAACAAAGGAGAAAAAACGCTGCTGTTAGCCCTTTATAGACTGTCTATTAATTACACTATAGAGGGACCATTGAATCAATGTCCAATGTCCAAAGATTCCTCTAAGAGGCTACTATCAATATGGCGACTTGATGCTGATACTAAATAGACCATCAAGCCTTATTCCCAAAAGACCTGATTTCACCAGTTGAATTTCCTTTCTGAAGGATAAGATCTTACAGAGCCTATGAAAACGGCTGTTTTGGCATATTTCTAGCAGGAACAGAAACATCCTTAAAATGACAATAGCAATATGGAGCAAAATTTCCCcttcaaaaataaatcagacagaatttcttttttctattctattttctATACTTTTTACAGGTGTATGTGCCTTTTCTAAGCTTGATTTGactataaaaagtttacaaatACACTTCCCATAATCAGCAGCTTTGGAATGCAGTTCTCATCTGATACTAGATAGTGAAACACACCTGAGATCTTGGAATTATACAACTGAGATAATGTTATGAATATGTCACTAAGAggcattacattaaaatatttaagtcTAAAAATAGATAGTTGtaaactatatattattatatatatgatatagttgtatattatatactacaccgatcagccataacattaaaaccactgacaggtgaaatgaataacattgattatctcgtt

Function

symbol description
rab42 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to be active in plasma membrane.

NR:

description
ras-related protein Rab-39B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913421.2 True 1589 mRNA 0.43 2 1039296 1042852

Neighbor

gene id symbol gene type direction distance location
cited4b LOC108269595 coding downstream 59034 976649 ~ 980262 (-)
si:ch211-1i11.3 LOC108271733,LOC108268173,LOC108433596 coding downstream 91734 926724 ~ 947562 (-)
map7d1a map7d1 coding downstream 120584 876545 ~ 918712 (-)
thrap3a LOC108269500 coding downstream 188079 831546 ~ 851217 (-)
sh3d21 sh3d21 coding downstream 208941 814535 ~ 830355 (-)
si:dkey-34d22.1 LOC108269691 coding upstream 3024 1045876 ~ 1064222 (-)
paqr7b paqr7b,LOC100305063,LOC108443418,LOC107732831,LOC107587883,LOC107700726 coding upstream 370218 1413070 ~ 1420752 (-)
stmn1b stmn1,stmn1b,LOC107700727,LOC107597104,LOC107587743,LOC103040240 coding upstream 378938 1421790 ~ 1427061 (-)
oprd1b oprd1,LOC108272459,LOC104938665,LOC107595906,LOC101079075,LOC101163183,LOC108249715,LOC107587885,LOC107735168,LOC107700731,LOC107756112 coding upstream 558472 1601324 ~ 1610701 (-)
tcea3 tcea3,LOC108269926,LOC108443426,LOC103044436 coding upstream 577194 1620046 ~ 1632254 (-)
G632 NA non-coding downstream 12025 984484 ~ 1027271 (-)
G570 NA non-coding downstream 250483 788612 ~ 788813 (-)
G568 NA non-coding downstream 257801 777910 ~ 781495 (-)
G553 NA non-coding downstream 315474 723551 ~ 723822 (-)
G555 NA non-coding downstream 316189 722751 ~ 723107 (-)
G857 pkib,LOC105417165,LOC107374466 non-coding upstream 395778 1438630 ~ 1447454 (-)
G943 NA non-coding upstream 536906 1579758 ~ 1579966 (-)
G951 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 non-coding upstream 539481 1582333 ~ 1594074 (-)
G1024 NA non-coding upstream 591761 1634613 ~ 1634849 (-)
LOC117599299 NA non-coding upstream 601190 1644042 ~ 1645433 (-)
G502 NA other downstream 440130 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 852449 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 873227 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 984143 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 1018013 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 1345796 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 1397994 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 1875371 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 2200983 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 2615328 3658180 ~ 3659319 (-)

Expression


Co-expression Network