stmn1b (stmn1,stmn1b,LOC107700727,LOC107597104,LOC107587743,LOC103040240)


Basic Information

Item Value
gene id stmn1b
gene name stmn1,stmn1b,LOC107700727,LOC107597104,LOC107587743,LOC103040240
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1421790 ~ 1427061 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914367.2
AGGCGCGTTGGTCCTTTTTTGCGCGAGCGAGCGCGCGGTGCTGATGCAGAGCGGAGCCTCAGCGCGTGAGGAGTCACACAGGAGCTGCTTTTCCTACAGCATCCAAGGTATTTGAAACCCTCAAGTTTAAGAGTGCAATGGCGTCCTCTGGAGACATGCACGTTAAGGAGCTGGACAAGCGTGCTTCTGGACAAGCATTTGAGGTCATTCTGAGTCCCTCGGCACCAGACGCCAAGGGAGAATTCCCTCTGTCCACCCCAAAAAAGAAGGAGGTGTCTTTGGATGAGATCCAAAAGAAACTGGATGCAGCAGAGGAGAGACGTAAAAATCATGAGGCAGAGGTCCTGAAGCACTTGGCTGAAAAGCGAGAGCATGAGAAGGAGGTTCTCCAGAAAGCGATGGAGGAGAACAACAACTTCAGCAAGATGGCAGAGGAGAAACTCAACCAGAAAATGGAAGCAAACAAAGAAAACCGTACAAAACAGATGGCAGCGATGAATGAGAAATTTAAGGAGAAGGACAAGAAAATCGAAGAAGTCCGaaagaacaaagaaacaaaagatgGAGGCGAGGGTGAAGAGAactgagggtttttttctttcttcttttgtgcTACTCAGTTTTAGGGAtggtatatgttttttttttttttttttttttacttatccaaagatttatttttgctccattaTATGGCCAGtattatgtgtttgttttgacaCTTTTTAGCTAAAAGTTAGGGGAGAAGCAGGTGCATAATTATCTTTTTATCTTCCCGTGCTCAGACCTACTTTATATCTCCATCACCTGTAGAGTTGTCTACTTGCAGCTTTTGGCCTGTTAAATAAGCAGTCTTTTATCCTATTGGGAAGCATGCCTGTGTTACACATAGGTCTCTGGCTTTGTTTATTGCATTGTGCAAGTTGACCCGTACCTGTGTATGTCAAACCTGCAGTTCTTTGAGCTTAATAAAGTTGCACAGTTGCTTGTTATGTTTTAGACTTTAACAGTTTTAGATCTGCCCTTTTTGTAGATGTTCATTTatgaacaaataataataatgatctgtctgcttgtctgtgtaACTCTCTTTCCATCTGGTTAACAAGCACATTCCTGCATTTACCTTGTCATTGGTAAActtgttaatatttttggagAAACACAGATCCGTACTAATATCACACTGCAGACAAATATGTGCATTGACAATATGACCTGTATTTGATATTGATAAACACACTGTCTATATTGGATGTACTTTATCTCTAAAGAAGGGAACCAAAAAAGAGCATTCACTTACACATGCGTGAACATTTCCAGTAATATCGAGCAGTGAGATCTAATCTGTTTTGTACGTGTTGCTGACAGAGTAAAGAACAAAGTGAATTGTCACCAGAGGATCTGTACATCTCAAAggctgtcatttttttgcatgttgcAGTGTTTTTCCTCATCTGTTTACCTGGTAAAGTGCATTAGCTAGAACATTCTCCAGTAATTCAGCCCGTATCTATAGCTTTCCTACTCGAGGGTGTGGAGAACCGTGGCCTGCTGTCGGATGCCGTTACTAAACGATTCAGAAAATATAACCTGTATTTGATATTCATAAACACACTTTCTATATTGGATGTACTTTATCTCTAAAGAGGGGAACCAAAAAAGAGCATTCACTTAAACGTGTGTGAACATTTGCAGTAATGTCAGGCAGTAAGGTCTAGTCTGTTTTGTAGGTGTTGACACCTAGTGGCCCATTTGAAGGCATGGCACTTTTTCATTcttgaaatttttttctaagaggTTGCTGGGAAAGACGTGATCTGCAACTGAAACATCAACTGAAAGAGGGTTTTTGATCAGCTTATACCCATGCAAAGCAAATCCGAGCTCATTTGACTGTCTTCAATAAAATAAGTTGTATGTTTCCACAATGTAAatacactttcatttttaaataccatgcaatgagatttttttttttttatttttacaaacccAACATTCCAAATCCAATTTCCAACACAATTAATCTTTACCTTGAATCTCTTGTTATGactacaaaaatattacatttaataagGTTTTACATTACCACTTAGGCCTTTTTGTCTAAGTAGGACAATTTTTCAATTTAGTAACGTAAAATGACTTAATCCTTTTCCAATTTCATGTACTCCTTTCTAGCACTGTCCATTTCCAGCatgaagaattaaaaaatgattatgtCTGTGCTTGAA

Function

symbol description
stmn1b Predicted to enable tubulin binding activity. Predicted to be involved in microtubule depolymerization; neuron projection development; and regulation of microtubule polymerization or depolymerization. Predicted to be active in cytoplasm and neuron projection. Is expressed in nervous system; neural crest; neural tube; and trigeminal placode. Orthologous to human STMN1 (stathmin 1).
stmn1 Enables tubulin binding activity. Involved in several processes, including establishment of skin barrier; negative regulation of signal transduction; and negative regulation of supramolecular fiber organization. Acts upstream of or within microtubule depolymerization and mitotic spindle organization. Located in extracellular exosome. Biomarker of hepatocellular carcinoma.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG:

id description
K04381 STMN1; stathmin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914367.2 True 2237 mRNA 0.39 5 1421790 1427061

Neighbor

gene id symbol gene type direction distance location
paqr7b paqr7b,LOC100305063,LOC108443418,LOC107732831,LOC107587883,LOC107700726 coding downstream 1038 1413070 ~ 1420752 (-)
si:dkey-34d22.1 LOC108269691 coding downstream 357568 1045876 ~ 1064222 (-)
rab42b rab42 coding downstream 378938 1039296 ~ 1042852 (-)
cited4b LOC108269595 coding downstream 441528 976649 ~ 980262 (-)
si:ch211-1i11.3 LOC108271733,LOC108268173,LOC108433596 coding downstream 474228 926724 ~ 947562 (-)
oprd1b oprd1,LOC108272459,LOC104938665,LOC107595906,LOC101079075,LOC101163183,LOC108249715,LOC107587885,LOC107735168,LOC107700731,LOC107756112 coding upstream 174263 1601324 ~ 1610701 (-)
tcea3 tcea3,LOC108269926,LOC108443426,LOC103044436 coding upstream 192985 1620046 ~ 1632254 (-)
tent5ba fam46b,fam46ba,LOC108443429,LOC107734389,LOC107597110,LOC107587747,LOC107700733,LOC107704962 coding upstream 226384 1653445 ~ 1659672 (-)
zdhhc18a zdhhc18,zdhhc18a,LOC108443430,LOC107734071 coding upstream 246701 1673762 ~ 1683841 (-)
pigv pigv coding upstream 258579 1685640 ~ 1688972 (-)
G614 NA non-coding downstream 272766 1037960 ~ 1149024 (-)
G632 NA non-coding downstream 394519 984484 ~ 1027271 (-)
G570 NA non-coding downstream 632977 788612 ~ 788813 (-)
G568 NA non-coding downstream 640295 777910 ~ 781495 (-)
G553 NA non-coding downstream 697968 723551 ~ 723822 (-)
G857 pkib,LOC105417165,LOC107374466 non-coding upstream 11569 1438630 ~ 1447454 (-)
G943 NA non-coding upstream 152697 1579758 ~ 1579966 (-)
G951 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 non-coding upstream 155272 1582333 ~ 1594074 (-)
G1024 NA non-coding upstream 207552 1634613 ~ 1634849 (-)
LOC117599299 NA non-coding upstream 216981 1644042 ~ 1645433 (-)
G502 NA other downstream 822624 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 1234943 124362 ~ 186847 (-)
ptpn6 ptpn6,LOC108263538,LOC107704909,LOC107714609,LOC107724803 other downstream 1255721 158623 ~ 166069 (-)
zbtb7b LOC108277650,LOC107565362,LOC108436080,LOC107745148,LOC107570794,LOC107679557 other downstream 1366637 21584 ~ 55153 (-)
khdc4 kiaa0907 other downstream 1400507 7370 ~ 21283 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 961587 2388648 ~ 2400257 (-)
hint3 hint3 other upstream 1013785 2440846 ~ 2451520 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 1491162 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 1816774 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 2231119 3658180 ~ 3659319 (-)

Expression


Co-expression Network