RNA id: XM_026913869.2


Basic Information

Item Value
RNA id XM_026913869.2
length 5217
RNA type mRNA
GC content 0.49
exon number 28
gene id si:ch211-1i11.3
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 926724 ~ 947562 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcccactcGGTATCACCTGCGCAATTACCCGACAGCGGTTGCGGCGCAGTTCAGGTATGCGGTTGCGGAGATCATGGAGTTgaagtgttaatgttaatgtgtttagGTGTTAATGTGATAGCGCGCAGGACACCATGTACACGAGCGAGCGCAGGCGCATGAGCCTGCACGAGGTGAAGAGGAGAAACTCGGTCCGAGTCGCGGCTGGAAGTTTCTGGCAGGACTCTCTGGCTCTGGAGCTCAGCGCCAGCAAGTGCGTGACTTCTCCGCGCAGCCGCAGTCGCGCGTTGTCCGTGGTCTACGTTGTCGTGGAGGACGCGTCGGTGCCGCAGAGTGAGCAGAACCTTTCCCTGAGGTGTGTGAGGGAAGCGTGTGCGGATTCCCACGCCGAGCTCCAGACCGTCCCGTTCGAGTCCATTGCGCATGCCACGGCCAGCACGCTGGATACGTTCTACAACGCAGATGTTGCCGTAGTTGAGATGAGTGGTTCTCTCAGTCATCCGTCTCTCTTCTATCACCTCGGTGTTAGAGAGAGCTTCAGCATGACCAATAACATCATACTGTACTGCAACAAGCAAGAGAGTGACCTGCAGCTTCTCAAGGAGCAGTGTGGGAGCTATACCTTCATCGCTTACATGGTGTCACCTCAGGGTAAAGTGTTTGCCTGTGATGCGACTCTAATGCGCGGAATCACGGAGATCCTGCAGCCTAGCTTTACCATCGAACCTCTTCTGACACCTTTAGTGGAGCAGCTGGTCAAGCTGTTTGAGAATGTGCACATCCATGCAAGCGAGTATGTGCATGAATCGATCCGGCGGGAGATCCGGATGGCACGTGAGCGTTTCAGTGGAGAAGCCCTGAGTCAGGAGCTGAACCGAATCCAGAAACGCCTGGACACTGTGGAGCTTCTCAGCCCTGACATAGTGATGAACCTTCTGCTGTCTTACCGGGATATCCAGGATTACGAGTCCATAATTAACCTGGTGGAAACTCTGAATGACCTGCCCATGTGTGCAGTGGCTTCACAGTCAAATATCAAGTTTCAGTACATATTTGCTTTGAATAGGAGGAATCGCCCGGGTGACCGTGAGAAAGCCCTATCAGTCATTCTGCCTATACTACAGTCAGGAGAGCCAGTGGCCTCAGACGTGTACTGTCTCTGTGGACGCATTTATAAGGACATGTTCCTGAGTTCTGGCTTCAAGGATGCGCACTGCCGGGATCAGGCCTGCTGCTGGTATGGTAAGGCGTTTGAAATGGAGCCCTCACTGCACTCTGGCATTAACAATGTGGTGCTTCTCATGGCTGCTGGCCATGAATTTGACTCTTCTGTTGAGCTGAGAAAGATTGGCGTCACTCTGAGCAGTTTGCTCGGTAGGAAGGGCAGTTTGGAGAAGATGCATGATTACTGGGACGTAGGTTTCTACCTTGGGGCTGGGATTCTGGCCAATGAGCACAAGAAAGTAATAGAAGCCTCGGAGAAACTCTACCGTCTCAAAGCACCAATGTGGTATATTGGATCAGTCATGGAGACATACATTCTGTACAAGCAGTTTGCCAAACCGCTAGTGGTGAAGCACCCCAAACAGGAAATTGTGGACTTCTGGATGGAGCTTCATATGCAAGCATGCAAACCTACTCTTTCCACAGCACATTGCCCAGTCCTGATCCTGGAGCCCACTAAAATATTCCAGCCCAGCATATTGAGCGTGTGTGAGGAGGATAAGAGCCGCACGGTGCAGCTGAGACACGTTACACAGCTACAGAAAGGCCTACATGAGTGGACATTCCCTGCATCAGCAATTCGTGGAGTGAGTATCTCTAAATTTGATGAGCGGAGCTGCTTCCTGTATGTGCTTTACAACTCTGATGACTTCCAGCTGTGTTTCCCAAGCGATCTACACTGCAAAGGATTCTGTGAGCTGGTGAACTCTCTGATCTGTCGGGGAGAAGGTGCAGGGGACGACTCCACCTTGGACAGTGGAGGACTGTTGGAGTACATGTATGAGACAGGAGAGAACGGAGAGAAAGTGGTGCTGGGGAAAGGAACTTACGGAGTGGTGTATGCTGGACGAGACTTGAGCAATCAAGTGCGCATCGCCATCAAGGAGATTCCAGAGAAAGACAGCACTTACTCTCAGCCTCTCCACGAAGAGATCGCTTTACACAAGAGACTGAAGCATCGCAACATTGTGCAGTACCTGGGCTCCGTCAGCGAGGGTGGCTTCATCAAGATTTTCATGGAGGAGGTGCCAGGCGGAAGCTTGTCCTCGCTCTTAAGGTCAAAATGGGGTCCTCTTAAAGACAACGAGCCCACCATTGTCTTCTACACCAAGCAGATTCTAGAAGGACTGAAATACCTCCATGATAACCAGATAGTTCACAGAGATATCAAGGGTGATAATGTCCTGATCAACACATACAGTGGAGTACTCAAGATCTCTGATTTTGGAACATCTAAAAGACTAGCAGGAATCAACCCTTGTACAGAAACCTTTACAGGTACTCTGCAGTACATGGCTCCAGAGATTATAGACCAGGGTCCTCGGGGTTATGGGAAACCGGCTGATATCTGGTCTCTAGGCTGTACCATTATAGAGATGGCCACTGGGAAAACCCCTTTCCATGAGCTGGGCAGCCCACAAGCCGCCATGTTCAAGGTTGGCATGTTTAAGATCCACCCCACTGTGCCAGAGTGCATGTCAGAGGAGGCTAAATCCTTCATCATGCGCTGCTTTGAGCCCAATCCTGATAAGAGGGCCATAGCGTCTGACCTGCTGAAGGACGCTTTCCTTAAGAGCAGCGCCAAGAGGAGGAGCAAACCTTCACCCAGCTTAGCTGAGACAGAGCCCAGCTCCTCTGGAGAATACCAGAGGAGCATGTCTGTACCCATAGCTGTGCATGTGGAGGACGTGGACAGTGACAAGACAGAGCTGTCTAATTCCCTCTATCTGAGGAAAACTATCCCTTGCCTTAGAGAAAATGACATCTCAGAGAGCCCTCCCTGCACCAACAACTTCCTGCAgacACCAGAGGGACCACAGGGGGACATGATGAGTCCTGCTGTGTCAGGAGAGCAGCTTGGTCTCTTCTTGCTCAGGAAAGACAGCGAGAGGAGAAACACTCTGCACCGCGTCCTTACTGACTATATCAGCCATGTACTGCACAATATAAACGAATCGCTCCCACAGACTGAAGAGCCCTGCATCACCTCTGAGCACATCAAACAGCTGATTGGTTGCCTGCGAGAAAACATCCGCTccccagacaggaagcagctaaCCAACCGCCTCCTGAAGTTGCGCACTAGCCTGCATAATGACGCAGTACCTCTCTGCAGCCTGCAGGCGGCACTCTTCAGCTTCCAGGATGCTGTGAAGAAGGTGTTGCGACAGCAGCAGGTGAAACCTCACTGGATGTTTGCTCTGGATAACCTGCTCAGACAGGCTGTGCAAGATGCCATTACCGTGCTTCTCCCAGaGCTCAGGCTTCAGCTCCAGTCATCCTTCGAGGCGGAGGAGAGTTCTAATGAAGCAGAACAGACGGGTGAGGAACCAAATGCAGAGTCACACAAGGAGACTAATGGCACGTCTCAGGAACATCAGCAGCACAGGCCAGAGAGCGTCAGTGCCAGGCTGCCCAACGGCCTCGTCACCAGCTGTAGCCCCCTCGCCCAGGAATTTATCCTGTTATGCCAGGAAACCAGGAGGTTGCTGACTCAGCTaaatgagaaggagaaggagtACCAAGAACTTCTAAAGAACTCGCTGCAGAACGTACAAGGAGCAATAGACACACTAAAGGTCAAGGCTGCAACAGAGAGCAGTGATAATAAGGCTGTCTGCAATAACGCTCAGACCCTGGCCATGGTGCGCTGGCTGAAGGCTGTCCCAGTGGATGAGCACACCGtaaacacaCTCGTGACTCATGGCTTCACGTTAGACATCCTGCTCCATATGGCCTGCAGAGATGACCTCAAGTACTGTGGCATCAAAGGTGGGATGGTGTGCCGTCTTTGGAGAGCCATTTCTGCACAGAGGAAGAGTCACCTGAGCATGGTCACGGAGGACAGTGAAGAAACCGTACTCTAACGCACCACTCACTCCAGGACCATATGAGGATCATATGAGCTCAGTGAGctttgaacatttttctgtctgGCAACATGTGCCTTTCGTGTGAGaccttgatttatttattccgTTTCACCGGGGAAGATGAACAATGATGGTGGAATTGCTACCTTTTCTAAAATTACAATATACtcattttctgtgtatgttctcATGctatcttttgtgtgtgtgtgtgtgtgtgtattcatgggtacacagtgtgtctgtgcataCGTAGAAGTAAATGGGTTTATTCTAGGACCATAAGGGTTTTTAGTTTGTCCCTCTAGGGGACCCGTTAAACATTCTTtgcagaaccctacaacagtgttCCCCCATCAAAGAGGGTTCCACATTGAATCCCTTTATGGagcttaactatccaaagaatccctaaaatacttttttataagagtgtgtgtatgtgtttaactatattatatatagttaaaaagattttaggtatacagacaggtgacaaacgaaaggaaaaaccaacgaagggtcttagtaaggtgttagATCAAAACAAGCTGCCAGAATAGTTTTAATGTGCCTTGGGAAGTACCTGGAGCACCATTCTTCTGAAAGACAGAGGTGATCAGACAGAACAACTTTGGATTGATCCTCAGTGACTATTTCCTCTAAGGGAGCAAGTGGTACCCAAAGCATGCCAGAAAAACgtccccacagcataacagccACTGTTTTTCCTTTAGTTTGTtccctgtgtgtatgtacagctGTGGGAATACGTaggatttgattttatttattttgaatgtcaAGTGTTTTCACCTCTCTCAACTTCAGAAGCAGTTTGTTGGCCTTAGTCAGCTGAAAAATTGTGAACTGTTTAAAAAGatctgtttctctggaaactttttGTACTTATACTGTGATTTTTACCAAGtctgttttttattactattttattactgttacttCATGGATTCTTCAGAATTAGACAGAACTTGAACGTGTAATCTgtaattgttgtttatttaaagcttCCACTCTACAGTGAACCCACTTTTTACTGCAACTGTAAGGCTTCTTTCAACACCAAAGACACTACAAAATAATGGACATTAAAGTAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU776 lncRNA downstream 137911 788612 ~ 788813 (-) True G570
TU773 lncRNA downstream 145229 777910 ~ 781495 (-) True G568
TU752 lncRNA downstream 202902 723551 ~ 723822 (-) True G553
TU755 lncRNA downstream 203617 722751 ~ 723107 (-) True G555
TU737 lncRNA downstream 244160 681106 ~ 682564 (-) True G540
TU849 lncRNA upstream 36922 984484 ~ 1027271 (-) True G632
TU829 lncRNA upstream 90398 1037960 ~ 1149024 (-) True G614
TU1086 lncRNA upstream 491068 1438630 ~ 1447454 (-) True G857
TU1180 lncRNA upstream 632196 1579758 ~ 1579966 (-) True G943
TU1190 lncRNA upstream 634771 1582333 ~ 1594074 (-) False G951
XM_034305087.1 mRNA downstream 8012 876545 ~ 918712 (-) False map7d1a
XM_034305115.1 mRNA downstream 8013 876545 ~ 918711 (-) False map7d1a
XM_034305084.1 mRNA downstream 8013 876545 ~ 918711 (-) False map7d1a
XM_034305104.1 mRNA downstream 8014 876545 ~ 918710 (-) False map7d1a
XM_034305093.1 mRNA downstream 8101 876545 ~ 918623 (-) True map7d1a
XM_026914059.2 mRNA upstream 29087 976649 ~ 980262 (-) True cited4b
XM_026913421.2 mRNA upstream 91734 1039296 ~ 1042852 (-) True rab42b
XM_026914148.2 mRNA upstream 98314 1045876 ~ 1064222 (-) False si:dkey-34d22.1
XM_034307703.1 mRNA upstream 98314 1045876 ~ 1063616 (-) True si:dkey-34d22.1
XM_026914130.2 mRNA upstream 465508 1413070 ~ 1420752 (-) True paqr7b
XR_004578099.1 other downstream 248924 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 327558 598781 ~ 599166 (-) True G502
TU238 other downstream 760655 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 764658 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 787880 137374 ~ 138844 (-) False spag1b
XR_004578455.1 other upstream 1493284 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 1970766 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 2296273 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 2710618 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 2726684 3674246 ~ 3675836 (-) True G2020

Expression Profile