Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU755 |
| length | 332 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 2 |
| gene id | G555 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047595.1 |
| NCBI id | CM018541.1 |
| chromosome length | 35600603 |
| location | 722751 ~ 723107 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU737 | lncRNA | downstream | 40187 | 681106 ~ 682564 (-) | True | G540 |
| TU709 | lncRNA | downstream | 57819 | 662763 ~ 664932 (-) | True | G515 |
| TU729 | lncRNA | downstream | 64733 | 657581 ~ 658018 (-) | True | G532 |
| TU698 | lncRNA | downstream | 108961 | 613158 ~ 613790 (-) | True | G504 |
| TU672 | lncRNA | downstream | 213587 | 508755 ~ 509164 (-) | True | G481 |
| TU752 | lncRNA | upstream | 444 | 723551 ~ 723822 (-) | True | G553 |
| TU773 | lncRNA | upstream | 54803 | 777910 ~ 781495 (-) | True | G568 |
| TU776 | lncRNA | upstream | 65505 | 788612 ~ 788813 (-) | True | G570 |
| TU849 | lncRNA | upstream | 261377 | 984484 ~ 1027271 (-) | True | G632 |
| TU829 | lncRNA | upstream | 314853 | 1037960 ~ 1149024 (-) | True | G614 |
| XM_026914013.2 | mRNA | downstream | 169964 | 542668 ~ 552787 (-) | True | colec10 |
| XM_026914015.2 | mRNA | downstream | 182172 | 530944 ~ 540579 (-) | True | mal2 |
| XM_026914011.2 | mRNA | downstream | 198976 | 519570 ~ 523775 (-) | True | LOC113526714 |
| XM_026911618.2 | mRNA | downstream | 388820 | 330438 ~ 333931 (-) | True | rps9 |
| XM_034306088.1 | mRNA | downstream | 513514 | 198652 ~ 209237 (-) | True | wnt4b |
| XM_026914137.2 | mRNA | upstream | 91428 | 814535 ~ 830355 (-) | False | sh3d21 |
| XM_026914136.2 | mRNA | upstream | 91428 | 814535 ~ 830354 (-) | True | sh3d21 |
| XM_034306666.1 | mRNA | upstream | 91428 | 814535 ~ 828466 (-) | False | sh3d21 |
| XM_034306671.1 | mRNA | upstream | 91428 | 814535 ~ 828390 (-) | False | sh3d21 |
| XM_026914139.2 | mRNA | upstream | 91428 | 814535 ~ 828389 (-) | False | sh3d21 |
| XR_004578099.1 | other | downstream | 44951 | 677401 ~ 677800 (-) | True | LOC117597201 |
| TU694 | other | downstream | 123585 | 598781 ~ 599166 (-) | True | G502 |
| TU238 | other | downstream | 556682 | 158802 ~ 166069 (-) | True | ptpn6 |
| TU237 | other | downstream | 560685 | 158802 ~ 162066 (-) | False | ptpn6 |
| TU214 | other | downstream | 583907 | 137374 ~ 138844 (-) | False | spag1b |
| XR_004578455.1 | other | upstream | 1717739 | 2440846 ~ 2451520 (-) | False | hint3 |
| TU1883 | other | upstream | 2195221 | 2918328 ~ 2919811 (-) | False | eny2 |
| TU2085 | other | upstream | 2520728 | 3243835 ~ 3281162 (-) | True | G1718 |
| TU2447 | other | upstream | 2935073 | 3658180 ~ 3659319 (-) | True | G2011 |
| TU2456 | other | upstream | 2951139 | 3674246 ~ 3675836 (-) | True | G2020 |
