Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU1357 |
| length | 202 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G1089 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047595.1 |
| NCBI id | CM018541.1 |
| chromosome length | 35600603 |
| location | 1849526 ~ 1849727 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko00100 | Steroid biosynthesis |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1285 | lncRNA | downstream | 199038 | 1649521 ~ 1650488 (-) | True | G1029 |
| XR_004579758.1 | lncRNA | downstream | 204093 | 1644042 ~ 1645433 (-) | True | LOC117599299 |
| TU1280 | lncRNA | downstream | 214677 | 1634613 ~ 1634849 (-) | True | G1024 |
| TU1190 | lncRNA | downstream | 255452 | 1582333 ~ 1594074 (-) | False | G951 |
| TU1189 | lncRNA | downstream | 255452 | 1582960 ~ 1594074 (-) | True | G951 |
| TU1368 | lncRNA | upstream | 19919 | 1869646 ~ 1872700 (-) | True | G1100 |
| XR_003402788.2 | lncRNA | upstream | 262629 | 2112356 ~ 2129427 (-) | True | LOC113526561 |
| TU1506 | lncRNA | upstream | 313597 | 2163324 ~ 2165381 (-) | True | G1216 |
| TU1532 | lncRNA | upstream | 400038 | 2249765 ~ 2250408 (-) | True | G1237 |
| TU1531 | lncRNA | upstream | 401223 | 2250950 ~ 2252392 (-) | True | G1236 |
| XM_026913668.2 | mRNA | downstream | 91770 | 1740743 ~ 1757756 (-) | True | gnl2 |
| XM_026913669.2 | mRNA | downstream | 111161 | 1733410 ~ 1738365 (-) | True | snip1 |
| XM_026913670.2 | mRNA | downstream | 117453 | 1727718 ~ 1732073 (-) | True | gpn2 |
| XM_026913724.2 | mRNA | downstream | 129756 | 1693034 ~ 1719770 (-) | True | arid1aa |
| XM_026913692.2 | mRNA | downstream | 160554 | 1685640 ~ 1688972 (-) | True | pigv |
| XM_026914145.2 | mRNA | upstream | 1173 | 1850900 ~ 1880574 (-) | True | fhl3a |
| XM_026914110.2 | mRNA | upstream | 74823 | 1924550 ~ 1928003 (-) | True | pou3f1 |
| XM_026913723.2 | mRNA | upstream | 287079 | 2136806 ~ 2147980 (-) | True | rragca |
| XM_026914304.2 | mRNA | upstream | 302029 | 2151756 ~ 2155178 (-) | True | LOC113526881 |
| XM_026914229.2 | mRNA | upstream | 403529 | 2253256 ~ 2262331 (-) | False | preb |
| XR_004578099.1 | other | downstream | 1171726 | 677401 ~ 677800 (-) | True | LOC117597201 |
| TU694 | other | downstream | 1250360 | 598781 ~ 599166 (-) | True | G502 |
| TU238 | other | downstream | 1683457 | 158802 ~ 166069 (-) | True | ptpn6 |
| TU237 | other | downstream | 1687460 | 158802 ~ 162066 (-) | False | ptpn6 |
| TU214 | other | downstream | 1710682 | 137374 ~ 138844 (-) | False | spag1b |
| XR_004578455.1 | other | upstream | 591119 | 2440846 ~ 2451520 (-) | False | hint3 |
| TU1883 | other | upstream | 1068601 | 2918328 ~ 2919811 (-) | False | eny2 |
| TU2085 | other | upstream | 1394108 | 3243835 ~ 3281162 (-) | True | G1718 |
| TU2447 | other | upstream | 1808453 | 3658180 ~ 3659319 (-) | True | G2011 |
| TU2456 | other | upstream | 1824519 | 3674246 ~ 3675836 (-) | True | G2020 |
