RNA id: TU1285


Basic Information

Item Value
RNA id TU1285
length 968
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1029
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1649521 ~ 1650488 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTAATGGTGTAATATtgaattgcactatccattctTCACTCTTATACATTGTGACAATGAATGCGTGAAAGCTGTTAGGATTTCAATTTAGGTCATTAATGACAGAAAGAAGCCATAATGTTCTACTTTCTTCGGTTCTGGACCTCCAGGGCAGTTTCCTTCTGGTGCTCCTTCCCTAGTAATTATCTAATAGCGCAGTCAGCATCCTGTGACTGTGCCTTTAAATGTGTAGCCTATGAAAGGCCAAAGTCAGATTTGTCCCCTTTTCTCTGTGAAGCGGGCAACCAATGTGACTGCAAAGCCCACtaggaaagaaaaatgcatgCTCCTCTGTGGTGCAATCAAAGGATGAACAGCAGCCAACAGAAGGTTCAGCTGCTCAGCTTTGTGTAGTGGAGAGAGCAAGCAGTGTTACTGCATTGGAACACAGAGTAGAGAGCTAACACCGGGCATGGGCCAAGTACAAGAGCTGTCACGTAGAGACATACCCTCATGCCCTTTCAGTGACTGCCTCTCAGTCTCTAAGCTTGGAGGAGAGTGCTGATAGCCCAACAAGAGAGCACTTTGAAGGTCAGAGTGTAACCCCAGAACACAGTACACAGCATCAAGCCCTCCTTGGCAAAACTACAGCTTTATCCTCCACCTAATGCAGTGGATCAAATGCCTGACACATTTTGTGGTATATCAGCCAAAGCAAATGGCTGAGCTACTACACAGTGTACTAGTTTAATAAAGGAGCTCTTATATGCATTAGACAGTGCAGGGACCTGGTCTGTGGTCTATGGTTACAACAGCTGATTTGGAAACCAGGGGCTAAAATCAGTGGCACTAGTAGAGAGGCCATTGGCCTCACTAGTGGTATGAAGCATTGTGGTGCAAATCTCTGTAGCAAGACCTAATGGTATTAGCCTCTGTGCTAATACCAAGTGGCTTATACCACAGAGCATTGGCTATTGGTCCTCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579758.1 lncRNA downstream 4088 1644042 ~ 1645433 (-) True LOC117599299
TU1280 lncRNA downstream 14672 1634613 ~ 1634849 (-) True G1024
TU1190 lncRNA downstream 55447 1582333 ~ 1594074 (-) False G951
TU1189 lncRNA downstream 55447 1582960 ~ 1594074 (-) True G951
TU1180 lncRNA downstream 69555 1579758 ~ 1579966 (-) True G943
TU1357 lncRNA upstream 199038 1849526 ~ 1849727 (-) True G1089
TU1368 lncRNA upstream 219158 1869646 ~ 1872700 (-) True G1100
XR_003402788.2 lncRNA upstream 461868 2112356 ~ 2129427 (-) True LOC113526561
TU1506 lncRNA upstream 512836 2163324 ~ 2165381 (-) True G1216
TU1532 lncRNA upstream 599277 2249765 ~ 2250408 (-) True G1237
XM_026913939.2 mRNA downstream 17267 1620046 ~ 1632254 (-) False tcea3
XM_026913272.2 mRNA upstream 2957 1653445 ~ 1659672 (-) True tent5ba
XM_034304501.1 mRNA upstream 23274 1673762 ~ 1683841 (-) True zdhhc18a
XM_034304506.1 mRNA upstream 23274 1673762 ~ 1683841 (-) False zdhhc18a
XM_034304508.1 mRNA upstream 23274 1673762 ~ 1683841 (-) False zdhhc18a
XM_034304510.1 mRNA upstream 23274 1673762 ~ 1683157 (-) False zdhhc18a
XR_004578099.1 other downstream 971721 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 1050355 598781 ~ 599166 (-) True G502
TU238 other downstream 1483452 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 1487455 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 1510677 137374 ~ 138844 (-) False spag1b
XR_004578455.1 other upstream 790358 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 1267840 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 1593347 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 2007692 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 2023758 3674246 ~ 3675836 (-) True G2020

Expression Profile