RNA id: XM_034304508.1


Basic Information

Item Value
RNA id XM_034304508.1
length 4749
RNA type mRNA
GC content 0.41
exon number 10
gene id zdhhc18a
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1673762 ~ 1683841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGGAAGTTAACCAAGCTTGTGTCAAAAACAAGGATTTGTTTTACAATCAATTTAAAGCGTATCAGTGTATTTACAGTCGGTGTGTTTCCATCTGTACTGCAGCGGCTCTTTATCGgatcctgaaatgttttcacCGTCTCCTGGCAGCGTCTGAATGAGCTCGGCTGCTCTTAGACTTAGCTTagattagcttagcttagcttagcctAGCATGGCTATGTGTTCAGCTAGTTATCTGGTTTGCTAGCTGGAGGCTTTCTGGTTTTGTTTTAACAATAAACGCAGCATGTGTTTAACTGGAACAGGCAATGTGAGGTGTCAGAAGTTAATCAGCATGACCTACTATAGCTATAGCATTAAATACCGCCATACAGATGTGTAGCATAGTATTAATATAGTAGCTAATCGGCTAGACAGTCTTAGTATTGTTTACTAGtattgttgtttacattgtttacTGATGCACTTCAGTCTGTCCTTTGTTGAATAATATCACAGTGTGCCGTGTCACTCGGTTAGTTAAAGGAAATTCTGTATAAGTGACGAATATTATTTGAATTTCATTAAACACCAGGGAGGATTTGCTACATTGTCAGCTGTACCTGTCGGTAACGGTGAGGACAGGTGACTACAGTTGAGGACAAGTGAGGACAGGTGACTGCAGTTGAGGACAGGTGAGGACAGATGAGTCCAAGTGAGGACAGGTGAGTCCAAGTGAGGACAGGTGAGTCCAGGTGAGGACAGGTGAGTCCAAGTGAGGACAGGTGTGCGGTATGTTCACTACAGGTGAACCCAGGGTTCAGGGTGTTCTGGAGAATCTGATTAGTGAGTCTCTGCTGTATTTTTGCCAGCTGTGGGATTGTACCCGAGCTCTGCTGCTTCATTAACCTGTATTCATAGACAAATTAACTATTCTGGTTGTGAAAATTGTTACCTGTACGTCCTGTGAATTCATAATCGCTTACAATGAAAAACTGTGAATACCAACAAATCGATCCCAGAGCACTCGGGACCCCGGCGTCCACACCGGCGTCCACGCTGCCACATCCGAGAAAAGAGCTTCCTCACCCGAGGAGAAAGTGGGAAGTGTTTCCTGGGAAAAACCGCTTTTACTGTAATGGACGCATCATCGTGGCGCGGCAGTGCGGCGTCCTGCCTCTGACCCTCAGCCTGATCGTCCTCACCACCACCTTATTCTTTACATTCGATTGCCCTTTTCTGGTGGCTCACCTCACCGTCTGCATCCCAGTGATTGCTGGAGTGCTTTTTCTCTTTGTGATCGTCACCCTTCTTCGCACCAGTTTTACAGACCCCGGGATCTTACCCAGGGCTTTACCAGAGGAGGCTGCTGACATTGAGCGCCAAATAGATAATTGTGGATCAGCTACATATCGACCCCCACCTCGGACTAAAGAGATCCTTATAAACGGTCAGCTGGTCAAACTGAAGTACTGTTTCACCTGCAAGATGTTCCGTCCACCTCGTACTTCACACTGTAGTCTGTGTGACAACTGTGTAGAGCGCTTTGACCACCACTGCCCGTGGGTGGGGAATTGTGTCGGAAAGCGCAACTACCGCTTTTTCTATACTTTCATCGTTTCATTGTCCTTTCTTACTTCCTTCATCTTTGGCTGTGTGATCACACACCTCACTTTACGATCACAAGGTGGGAAAGGCTTTGTACAAGCCTTACAGGAGAGTCCAGCCAGtgttgtggaactggttgtttgttttttctccatctGGTCTATCCTGGGTCTGTCTGGCTTCCATACCTACTTGGTGGCTTCCAACCTCACAACTAATGAAGATATTAAGGGCTCTTGGTCAAGTAAAAGAGGAGTAGAAGAATCTGGGAACCCTTACAGCTATAACAGCATCTTCACTAACTGTTGTGTGGTGCTGTGTGGTCCAATGCCTCCCAGTTTGATTGACAGAAGAGGGTTTTTACCTCCAGATGTCATCCCTCAACCAGTCACCTCTGAAACTGAGCTCCATCCTTTCATGACAAAGAACGACACCAACATGTGCACACAGGGTGCCAAGGAGCTTTTGGAGTCAGTTTCTCACTCCTCAGTGGTCAAGAGCAGCTGCAGCTCAGCCACACCCAAGACCACTCCAGTGACCCAGGAGAATCTGCTAACTACAGTCTCAAGCACTCTCAAGTCTCCATCTGGTAGGACTTCTACCAGCTGCTTTGGAAAACAGAAACACCATCTGACGGACAAGACTTGCCCTCAGCAAATGAGCAAAAAGGCCACACTGGATGCTCAGGCACTTAGCTTCCATCTTTCACTCTATTCTGTTAGCCATAGTTCTCTCATTCTCAGTGATGCTTCTGACATGGGCTTTCTCCCGCTCACCTGAGTACAGAAGCACCAGCCCCAGCAGACAAGACATAGCACCTAAccctcatttattcatttcactcAGAATAGGGTTAACAGATGGCAATTCACTCAGGTCGTCCTCAGGTCtctaaacagtgaaaaatgcCCTTTGGACCTAAGATTTAGTGAACAAATTTGTAAACAGAAGATTGATTTAGGATTAATTATGGTTCTCTGTTTCATCTGCAGAGTGGGAATAATAGGAAGCACAATACACATTTGACAAGAAAGGGTCATTTCCTGTTCTCTCCACACTGCGCACAGCTGTGTTTGGTGTTGCACTAAGCCTTGAGCCATACTTAAGATTTACCCATTGACTTGTATTCATAGCAGTaacttttgtttaaagatcaGAGTTGTGTAAGGAAAAAGTCTCCTGACATGTGCAGCCCAAAGAGGCCTCAAATATGTAACCGTTATGAGCTATGAAATACAGAAAGGGATACATAATCAGGtttaatttgtaaatgattacttcatgagtgaatgagtgtaaaAGTATGTATCATGAGAGTGGAAAAGACTACTTATTTGTGTGTTGATGGTAATTTGTTGGTCAGTTATTTAAGCTCTGGAATGAAATGACTAGGAAGTGGTCTTCAAACCTTCAAAACATCAGCACTGGAGTAGTTCCACAAATGGATGGGAGCTCCTTCAATATTAGCATCAGTAAGAGAAAGTGGAATGGGATGAGACCTTTATTTAGAAGGATATATTAATGAAGCAAAACTTTGCAGCATGGTGGTTGGGCTAAAGCAGCAGGCTGAGGAAGCAACATTCACTTTGCAAACAGTGTTCTTGGTcttaatatctttaaaaaaaaaatctaagtcaGGAGTgaactatttttgttttgtgctgCACAGTACAACGTATTGATTGTACACAGATGTAGTGAAACTGTCCTAGAAAATGTAGACTTCATTTAAAAGCAAAGTGAAAGTTAAATTATactagcagtgtgtgtgtttggtaatGTTTTACCGTACTGTTCATTCTACgtgtaaacaaaatattcattaaatatttaggTATGTATACTCTGAAGACATGCAGACAAGTTTGAGCACCATTggctaaagatttttttttttcttggttgacaaaatttgtatatttttgttagTATGACTTTAATATCGGTTAAAAAGTAATGTTGGTTCATAGACTTTTTGCTATACTTAAACCGGAAGTATTACATTCAGGGATAGGTTAGAAAGaagaatggaaataaaatgttgAATTAACGAGAGGCAGgcaaataatgtataatgttagGCATCAGAAATGAGCTGAGATAAGTGTTATCTTTAAAACAGTTAAAGCATCTTTGTTGGAATTCACCgtataatgagggaataactgcAGGAGAGACTGACAGCGATGAACAGAAGAAGACAGCTGTGTGGTTTGAATGCGTTCAGATGTGAAACCTGTCCAAATGTGAGTTGTCCTGTGAGCTTGTTGACATCAAACAACAAACCATTACTGTAAGTTTTGAGAAGCTAACACTTGACTGACACTGGGACTGTGGGAATGTGTGttctattgtatttttttaggctagtctcttattattattattattattattattattctttaataccATGTCAGTTGAGAAGTAATTACACAAGTGTGCATAGCCAATACTGTAAAAGTGATTGTTCCAttactgtatacagtactgtgcaaaagtcttaggcacatgcaaagaaatgctgttaaGTAAAGAGgccttcaaaaataaagaaatgaaacatttctatataaaaaaatactataaagggcagtaaacagtaataaagtaaacaaagttCATATTTGTTGTGACAacactttgctttaaaaaaaaaaaaaatcagtatcagatacagtttgtgcagttttataaagaatttGATGTTCAGTCATCACTTGTGACACTCTTTGATCTGGTTTGTCAACACTAGATGGCACATTTATCCTTCACTTTAAACAAATGCCCTGATTGTCCTGTCTTGTCCAGAGTAGCGTGTCCAAATCTCAGGCCTAACGTCTCATGTCCTGCACTGCTGAGTGATTTCCATGCTCCAGTGAACATAATTCATCTCATTAAGACTTTGGTGAAGTGATGAGTGAAAGAGCAACAAAAACAAgctgtaccttttttttttttatgactctAGTGTGTACTTGATAAATATCTTCTCTGTAAAGTCTTCTACTCGAGCCTAACAAACAGACCATGCTGGTTCTTTCCCCGGTTCCAGTCTGACTTTCAGTAGAGGAATGTCTAAATGGTATTTATTCCACATTCTATCTTTTGTCTGTGTCTGCTTTtctactttttaataaaaaccaaTGTAGCAAACAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1285 lncRNA downstream 23274 1649521 ~ 1650488 (-) True G1029
XR_004579758.1 lncRNA downstream 28329 1644042 ~ 1645433 (-) True LOC117599299
TU1280 lncRNA downstream 38913 1634613 ~ 1634849 (-) True G1024
TU1190 lncRNA downstream 79688 1582333 ~ 1594074 (-) False G951
TU1357 lncRNA upstream 165685 1849526 ~ 1849727 (-) True G1089
TU1368 lncRNA upstream 185805 1869646 ~ 1872700 (-) True G1100
XR_003402788.2 lncRNA upstream 428515 2112356 ~ 2129427 (-) True LOC113526561
TU1506 lncRNA upstream 479483 2163324 ~ 2165381 (-) True G1216
TU1532 lncRNA upstream 565924 2249765 ~ 2250408 (-) True G1237
XM_026913272.2 mRNA downstream 14090 1653445 ~ 1659672 (-) True tent5ba
XM_034306340.1 mRNA downstream 41508 1620046 ~ 1632254 (-) False tcea3
XM_026913692.2 mRNA upstream 1799 1685640 ~ 1688972 (-) True pigv
XM_026913724.2 mRNA upstream 9193 1693034 ~ 1719770 (-) True arid1aa
XM_026913670.2 mRNA upstream 43877 1727718 ~ 1732073 (-) True gpn2
XM_026913669.2 mRNA upstream 49569 1733410 ~ 1738365 (-) True snip1
XM_026913668.2 mRNA upstream 56902 1740743 ~ 1757756 (-) True gnl2
XR_004578099.1 other downstream 995962 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 1074596 598781 ~ 599166 (-) True G502
TU238 other downstream 1507693 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 1511696 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 1534918 137374 ~ 138844 (-) False spag1b
XR_004578455.1 other upstream 757005 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 1234487 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 1559994 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 1974339 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 1990405 3674246 ~ 3675836 (-) True G2020