RNA id: TU1368


Basic Information

Item Value
RNA id TU1368
length 3015
lncRNA type intronic
GC content 0.36
exon number 2
gene id G1100
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1869646 ~ 1872700 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttataatccATATAATTAcagggaaaaatgaaaaatttattaTGTTAGCTCACCAGGTAAGTGAAAagtccagtgtgctgcccagtccatGTTTTGGTTACCAGGAAACTTAAATGAAAGAATTAGTAGATAAAGTAATGTAATAACACATTTCctgctagctagcaagttaaGTGCATCAATACAGACTAAAGGGAACTGTCCAGTAAAAATCATTCCATCAATATAGTTACAGCATCTAGATGCGCCACACTGGCATAATGTTTAAACACAGTGCACTATGTTTAAACACAGAATCCTACCATctcttatttacacacacatttggtgCACAGACATGTGCCACCAAGGGGATTGCGTGTGTCTGTTTCCATAAATGTTTGTGGTATTGCCAGTAATTGAGATTATTCTGGGTAAAACAGTTTTATTGCTGTTAAACCCAAGATGGCCTGGATCAATCAGAAGGTAGTGGAGATCCCACTGCAGTGAACAGTGGCAGAGAAAGCAGGAGCCAGAGCACTGTGTCTATGAGGTAATGTCTCTCCCCCTCGCTGGCACACGCGTGGCCCTGTGTCTTAGACTGTGGGACGACAGAGGGAATTAAGGGGGGATGGGGCCATGGCAGCTTGATTTATAGGCACCTTTGAAGTGAGTTCACTCCAGCTGTAAGGCTTGCCGTTCTGTGTTTCAGAGCCTGGGACGTAGCTCCCAGAGTAccgaaatggaaaaaaagaccCCTGTGGATCAGGGCCCCCACCACAACCTGAATTCTTACTACTTGATACTAATAGATTTTCTAACGCTCACTTTTCCACGCACTACATGTACTCTTATGAACACTAGAGTAAAACGTGgcagaaggaaaagaaggaaggtGGTCCAGTTTTGATGGGTCTGCTGAGACTCATaaaagaggagaaggagagacatGTTTAAGTCCAAACCAGCAGGCAATGGCAGAGAACACCAGTTCTGCTTTTCTTGGATTAATGTTCAAACGAAACGTTTGTTTATataactgtgtttgtgtgggtatTCTGTTCAGAAGTATTTGTGCTAGTTCTCAATGATTTGAAAAGGTCTGATTTGTTTATATAGGACACTTGTATTGATGTAGTAATAGTgtacaatgatgatgatggctaAATCAAGTATATGAAAGAGCACAAGGCACATGTTATGTGCAAAAATGAGCCCTGAAGAAAGGCACTCACATCACTTtgatgaaatacatttatggtttcttaaagttgaggttTCAATTTATGCTATAAAcagaaaaacccaattttggcctttttttaaattctttttttgaCTGTTCACCAGCATCCAGCCACACCTATGTGAAAGCATTTAACAGCTGTATCAAATGTCTGATCTAATGTAGATATGTGGAGTTAGATGTGGAGTCAGTCTTGTGTAGTCAGATGTAAGCACAAAATCTATTTAAAGGTTTATGCAAGAACTGTGGCTATAATCTTTATCAGGGATCATGGAACAAGCAGGCCATCACAGGCAAATCCATACTCAGAGTAAACACAGGCAGAGTTCAAAAccataaaaaacacaaatataaactacaccaggttttaaaaaaaaaacacagtaacaaTGATCAGAATAACTGTGTCTACACGTGCAATTTTCCACAAGGATAGACTACAGAGAGGGATATAAATATTTGACACAGGTGTGACAAACTAGGCCCAGCTGTAAACAATGATCAGGGGCCAtggaggagcaggagcaggagcaggagcaggagctggagaaaacaggaagtaatcaGGAGGTGTTCATGGTGTTATTGTTCTCAGTGGAAGCTCCTCATAGGAAGACAGCATCCCTAAGACTGATTTATAAGAAAAACCATGTGCTGAATACCATAGCTCATTCAGCCATTTGGAAAAGGGGGTGGTATtgatttaatacaatttttattgaaatttattATGCATTCCTCTGCATAATAGTCATTGCTCCAGGAAAGTGTGTGCTGAAAACTGTTTGGGATGAAGTTAATAGTTCAAATGAAGTTGGTTGACATGGAGTCAGAGTGCTGTGTGTATTTCCTGCAAGACTCAGCAGAAAGCCATCGCTAAGAGACATAAACAAAGGGTCTAGTGGAGGGGTGCAAGCAGCTGTTGTAGTGACGGCTCTTCCTGAACAACTCCTTCATTGTCTTCTAGATCTGCTGCTGCCGCcactgtttgttttggtttcttttaACCAAATAATGAGCATGTCTGTCTTTCCTCTCTGAGTCTGTCTGTGCATATTTTAGTGCTAAATATTCGAGATAGGCTGCTCATCTGTCAGTGTCTGAATTTGTTTGTCAGATGGTGTGAGATGTCTCTGGTGTTGGGTCATACAGGAAgtagcagagtgtgtgttttcacaaaTCAGGTCAGCTGATGTCGGGTTATTGGGTTTTATAAATGTCAAGCAGAGGTTAGTTAGTAGTCAAACCCCTTAAATCCCTGGCTTATTTACTCAGTTGTTCaccttaaagcatattatttactAACTACTTTAAATTACTCATAATGTACCATGAAATTAGTAGGACAAAATATGCCtgtcttatttatttgtatgaGCACAGACTCCTGTTTCTGCTTGTTTTAGTTTGTTGCCATCTTTAACTGCAGGCTGCTCTACATGTAGAtgaaaagcacttctgtaagttgctccaGATATGAGAATCTGCTAAATTTTGCGTATGTAAATAGTTATAGTGAGGAACATGAGTCTAAAAGAATATTGGTTCTTATTAACAGTGGCTCCTTAATGTTATCACGGTGTCATCGCATATTGCTAGGAACTTTGCCAGCTGACTTCTAAATATATCcttgatttacaaatgtacAGGAAGATACAGACTGAGTTATTACCTGTTGCTATAATGTTAccttaagttttatttataggtTCATGCTTTAACTGTctattacaattttccttttaaattcAGCTGAAAactttatgcattttaaatgaCATGACATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357 lncRNA downstream 19919 1849526 ~ 1849727 (-) True G1089
TU1285 lncRNA downstream 219158 1649521 ~ 1650488 (-) True G1029
XR_004579758.1 lncRNA downstream 224213 1644042 ~ 1645433 (-) True LOC117599299
TU1280 lncRNA downstream 234797 1634613 ~ 1634849 (-) True G1024
TU1190 lncRNA downstream 275572 1582333 ~ 1594074 (-) False G951
XR_003402788.2 lncRNA upstream 239656 2112356 ~ 2129427 (-) True LOC113526561
TU1506 lncRNA upstream 290624 2163324 ~ 2165381 (-) True G1216
TU1532 lncRNA upstream 377065 2249765 ~ 2250408 (-) True G1237
TU1531 lncRNA upstream 378250 2250950 ~ 2252392 (-) True G1236
TU1533 lncRNA upstream 391675 2264375 ~ 2264574 (-) True G1238
XM_026913668.2 mRNA downstream 111890 1740743 ~ 1757756 (-) True gnl2
XM_026913669.2 mRNA downstream 131281 1733410 ~ 1738365 (-) True snip1
XM_026913670.2 mRNA downstream 137573 1727718 ~ 1732073 (-) True gpn2
XM_026913724.2 mRNA downstream 149876 1693034 ~ 1719770 (-) True arid1aa
XM_026913692.2 mRNA downstream 180674 1685640 ~ 1688972 (-) True pigv
XM_026914110.2 mRNA upstream 51850 1924550 ~ 1928003 (-) True pou3f1
XM_026913723.2 mRNA upstream 264106 2136806 ~ 2147980 (-) True rragca
XM_026914304.2 mRNA upstream 279056 2151756 ~ 2155178 (-) True LOC113526881
XM_026914229.2 mRNA upstream 380556 2253256 ~ 2262331 (-) False preb
XM_026914228.2 mRNA upstream 380556 2253256 ~ 2262249 (-) True preb
XR_004578099.1 other downstream 1191846 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 1270480 598781 ~ 599166 (-) True G502
TU238 other downstream 1703577 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 1707580 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 1730802 137374 ~ 138844 (-) False spag1b
XR_004578455.1 other upstream 568146 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 1045628 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 1371135 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 1785480 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 1801546 3674246 ~ 3675836 (-) True G2020

Expression Profile