RNA id: XM_026913939.2


Basic Information

Item Value
RNA id XM_026913939.2
length 2477
RNA type mRNA
GC content 0.42
exon number 18
gene id tcea3
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 1620046 ~ 1632254 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGTGCTGCGCAGACACGCCCCCTGGCCGAGCGGGACGCTGCAGAAACGAGCTCCAACTGCGACCCAAACTTCTACCATTACACgcatgtgtatttgtattttcttttacatgctCTAAAGTTTATCGACttctttatacatttatactgtaGGCATAACTCATGCGTACACAATGACACGAGAGGAGGACCTGATACGGATTGCGAAAAAGCTAGACAAAATGGTGTCTAGGAATAACACGgaagGTGCTCTTGACCTGTTGAGAGAATTGCAAAAATTCAATATGACCCTTAAGTTGCTTCAGGACACAAGAATTGGTATGTCTGTCAACGGAATAAGAAAGCACTGCAGAGATGAGGATGTCGTCTCCCTTGCGAAGATTCTTATCAAAAACTGGAAGAGGCTATTAGATTCTAGCCATTCCCAGAAGGCTGAAAgaccaaatgaaatgaaaaatgggaGCGGGGCCAGTACACAATCACCTGGTGGACCTTCTCCAGACACAGAGTCGAGCCCAAAATCCAGTTTAAACGCTCCCAAGAAACCTGTTGATAAgcacagaaaagagaaaactgaGGCGttgtttaagaaagaaagacaagaaagTGACCACAAAAAGGAAAAGCACATCAGTAATCACACaaaggagagggagagGATGAGTGTTATGGATTCGAGTGTATCCTCCTCTGCTGCGCCTCTCCATCCTCCCAAGTGTTCATCAGTGGAAGTGAAGAAAGACAGGAGAGAGGCTCCCGATCCCCAGAGTCCTCctcatcttcttcatcttcaccaTTCTCTTCCTGCTCATATTCGTAAACAGCAGCCTGAAGTGAAGAAAGACAGGAGAGTGGCACCAGAAACTCTGACCTCTCAGCATTCTCATTCTCATCATTCCTCTTCTCATAAAAGGCCAGAGGTTCCTAAAGAGAGAAGGGATTCCTCAGATTTCAGTCAGCAGCCTCCGAAAAAGCCAGTTAACGACgcaaagaaagaaaggaaagACTCCACTGACTCTAAGTCTGGCCAACGACAGCAGTCAAGTGACTCCAAACCTCAGAGAAGGGACTCGGGTAACTCAAAGTCTGTAAGCTCACCCCTGCCTAAGAAGCTCTTGGAGGAAAGGAGAGAATCTCATGGCCCTAAGTTGACTCTCCCTGGAGCTATACAGAGAAAGGTGTCCACGGACAGTAATGATGGACGAAAAAGTAAACCTGAGACCCCGAAGACACCCAGCACCCCGACTACCCCTCTGTCCCCTTCCTTTAGCCCTGCTGGCGGTCCTCTCTCCCCTCACCTGCTCACTGGGGACTCCATCAGGGACAAGTGCATTGAAATGCTGTCAGCTGCACTACGCACAGATGATGACTACAAATATTATGGAGCAAACTGTGATGCCATGGCAGCTGAAATTGAGGATCATATCTACCAGGAGATTAAAGCCAcagatatgaaatataaaaacagagtACGTAGCCGCATCAGCAACCTTAAAGATCCAAAGAATCCAAATTTACGCAAGAATGTCCTGGGAGGAGCCATCGAGCTGAGTCGCATAGCCACCATGactgcagagGAAATGGCCAGTGATGAGCTGAAGCAGCTGAGGAACATTCTGACTCAGGAAGCCATCCGCGAGCACCAGATGGCCAAGACCGGTGGCACAGTTACTGACCTGCTGCAGTGTGGCAAATGCAAGAAAAAGAACTGCACATACAACCAGGTGCAAACTCGGAGTGCTGATGAGCCAATGACCACATTTGTGCTGTGCAATGAGTGTGGAAACCGCTGGAAGttttgctgATTCCTGTTCAAAGCTCCATCTACAGTGAACACTTGggatcttcttcttttttttaaatgtagattaTACTGCAGTATGCGGTTTTTAAAAGTCAAATTAATTGTAATGGCTTAATTGACTACTGGagttaaaaaaatcaaacaatgcCATACAATAGAAAATGCAACCTGTATAATTTTaggaaataaattttttttttaaatttttctacCACTTACATTAACTGCATGATTTGAAGTGAAacttaaactaaaaaaaaaaaaagttggaaatCCACTTGTAACACagaattttttgtaaaatttgtgCTTTCCTTGGAGTATTAATCAAAACCACAATGTACATTGTTGTACATGCTAGAGCAACAATTTAACGACGAAGCTGAAAAGCTCTgcgtaaattaataaaataataacaataaaactaataaaaataacaaatgaatTTGATTATTGTGAGgcattagtattagtattaacaTTTCTTGAAAGGCTGTTTGAATTCATATACGCTACAGTAATAATGTGAAGTATCGAGTGATGCCTAGAGTAAATAAAGTTGTATTTATATTGATGCTGAAGGTATTTTTGTGGTCTATAAGTACTTACTGTACCATGTTTAATAGCACTTCAGTTTGCATTACTTGCTGAATAAATACAAGACGTAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190 lncRNA downstream 25972 1582333 ~ 1594074 (-) False G951
TU1189 lncRNA downstream 25972 1582960 ~ 1594074 (-) True G951
TU1180 lncRNA downstream 40080 1579758 ~ 1579966 (-) True G943
TU1086 lncRNA downstream 172592 1438630 ~ 1447454 (-) True G857
TU829 lncRNA downstream 471022 1037960 ~ 1149024 (-) True G614
TU1280 lncRNA upstream 2359 1634613 ~ 1634849 (-) True G1024
XR_004579758.1 lncRNA upstream 11788 1644042 ~ 1645433 (-) True LOC117599299
TU1285 lncRNA upstream 17267 1649521 ~ 1650488 (-) True G1029
TU1357 lncRNA upstream 217272 1849526 ~ 1849727 (-) True G1089
TU1368 lncRNA upstream 237392 1869646 ~ 1872700 (-) True G1100
XM_026914076.2 mRNA downstream 9345 1601324 ~ 1610701 (-) False oprd1b
XM_026914075.2 mRNA downstream 11663 1601324 ~ 1608383 (-) True oprd1b
XM_026914367.2 mRNA downstream 192985 1421790 ~ 1427061 (-) True stmn1b
XM_026914130.2 mRNA downstream 199294 1413070 ~ 1420752 (-) True paqr7b
XM_026914148.2 mRNA downstream 555824 1045876 ~ 1064222 (-) False si:dkey-34d22.1
XM_026913272.2 mRNA upstream 21191 1653445 ~ 1659672 (-) True tent5ba
XM_034304501.1 mRNA upstream 41508 1673762 ~ 1683841 (-) True zdhhc18a
XM_034304506.1 mRNA upstream 41508 1673762 ~ 1683841 (-) False zdhhc18a
XM_034304508.1 mRNA upstream 41508 1673762 ~ 1683841 (-) False zdhhc18a
XM_034304510.1 mRNA upstream 41508 1673762 ~ 1683157 (-) False zdhhc18a
XR_004578099.1 other downstream 942246 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 1020880 598781 ~ 599166 (-) True G502
TU238 other downstream 1453977 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 1457980 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 1481202 137374 ~ 138844 (-) False spag1b
XR_004578455.1 other upstream 808592 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 1286074 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 1611581 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 2025926 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 2041992 3674246 ~ 3675836 (-) True G2020

Expression Profile